RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA785164", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA785164 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7144754 7144754 PRJNA785164_P_NODE_44766_length_269_cov_1.438776_g44301_i0 PRJNA785164 44766 269 1.438776 3.87030744 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 87 1.21e-17   NR MCF7843864.1 2044595 g44301 i0 79 0.691449814126394 62 12 69.1 1 208 23 1 61 MCF7843864.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 186 87 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29358988 29358988 PRJNA785164_P_NODE_59489_length_243_cov_1.211765_g59024_i0 PRJNA785164 59489 243 1.211765 2.94458895 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 73.6 1.03e-13   NR MBP6920956.1 2044595 g59024 i0 42.7 1.01234567901235 82 44 97.5 1 1 237 37 118 MBP6920956.1 6-phosphogluconolactonase [Candidatus Altimarinota bacterium] diamond 246 73.6 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29927460 29927460 PRJNA785164_P_NODE_55031_length_247_cov_1.770115_g54566_i0 PRJNA785164 55031 247 1.770115 4.37218405 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 133 7.4e-35   NR MBP6921535.1 2044595 g54566 i0 87.7 3.54655870445344 73 9 88.7 0 27 245 396 468 MBP6921535.1 chromosomal replication initiator protein DnaA [Candidatus Altimarinota bacterium] diamond 876 133 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;