RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA785164", tax_clade = "BD1-7 clade" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 1 ✖

tax_kingdom 1

tax_clade 1

  • BD1-7 clade · 1 ✖

bioproject 1

  • PRJNA785164 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29895803 29895803 PRJNA785164_P_NODE_30851_length_329_cov_1.203125_g30386_i0 PRJNA785164 30851 329 1.203125 3.95828125 BD1-7 clade bacterium 2029982 Bacteria Bacteria 99 1.78e-21   NR CAA0101178.1 2029982 g30386 i0 47.9 0.875379939209726 96 50 87.5 0 1 288 348 443 CAA0101178.1 Uncharacterised protein [BD1-7 clade bacterium] diamond 288 99 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   BD1-7 clade bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;