RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA784979", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA784979 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26927098 26927098 PRJNA784979_S_NODE_7842_length_183_cov_1.410448_g7800_i0 PRJNA784979 7842 183 1.410448 2.58111984 Nitrospira sp. 70125 Bacteria Bacteria 124 1.83e-31   NR MBK7421574.1 70125 g7800 i0 100 0.983606557377049 60 0 98.4 0 4 183 183 242 MBK7421574.1 hypothetical protein [Nitrospira sp.] diamond 180 124 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
28317025 28317025 PRJNA784979_S_NODE_5966_length_202_cov_1.150327_g5924_i0 PRJNA784979 5966 202 1.150327 2.32366054 Nitrospirales bacterium 2358460 Bacteria Bacteria 60.1 2.67e-10   NR GJL61343.1 2358460 g5924 i0 64.6 1.38118811881188 48 17 71.3 0 2 145 1 48 GJL61343.1 MAG: hypothetical protein NPIRA03_42000 [Nitrospirales bacterium] diamond 279 60.1 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales     Nitrospirales bacterium
31918601 31918601 PRJNA784979_S_NODE_9397_length_172_cov_0.983740_g9355_i0 PRJNA784979 9397 172 0.98374 1.6920328 Nitrospira sp. 70125 Bacteria Bacteria 110 8.97e-30   NR MBK7421591.1 70125 g9355 i0 98.2 0.959302325581395 55 1 95.9 0 7 171 57 111 MBK7421591.1 hypothetical protein [Nitrospira sp.] diamond 165 110 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;