RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA784979", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA784979 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26736705 26736705 PRJNA784979_S_NODE_10321_length_167_cov_0.864407_g10279_i0 PRJNA784979 10321 167 0.864407 1.44355969 Desulfurellales bacterium 2482794 Bacteria Bacteria 63.2 5.47e-10   NR TXH50336.1 2482794 g10279 i0 76.6 0.844311377245509 47 10 82.6 1 139 2 163 209 TXH50336.1 MAG: AAA family ATPase [Desulfurellales bacterium] diamond 141 63.2 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
27780354 27780354 PRJNA784979_S_NODE_14004_length_153_cov_3.211538_g13962_i0 PRJNA784979 14004 153 3.211538 4.91365314 Helicobacter pylori 210 Bacteria Bacteria 47.8 1.29e-5   NR GAA8832561.1 210 g13962 i0 75 0.901960784313726 24 6 47.1 0 153 82 2 25 GAA8832561.1 hypothetical protein Kyoto149A_4760 [Helicobacter pylori] diamond 138 47.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;