RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA784979", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA784979 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30726360 30726360 PRJNA784979_S_NODE_11974_length_164_cov_0.886957_g11932_i0 PRJNA784979 11974 164 0.886957 1.45460948 Bdellovibrio 958 Bacteria Bacteria 72 4.93e-13   NR KYG67466.1 959 g11932 i0 61.8 3.01829268292683 55 20 98.8 1 162 1 231 285 KYG67466.1 isochorismate synthase [Bdellovibrio bacteriovorus] diamond 495 72.4 0.994475138121547 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
31001605 31001605 PRJNA784979_S_NODE_11794_length_164_cov_0.886957_g11752_i0 PRJNA784979 11794 164 0.886957 1.45460948 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 99.4 4.07e-24   NR MBL7545534.1 2026715 g11752 i0 96.2 0.969512195121951 53 2 97 0 162 4 151 203 MBL7545534.1 transglycosylase SLT domain-containing protein [Pseudobdellovibrionaceae bacterium] diamond 159 99.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;