RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where bioproject = "PRJNA784979", tax_clade = "Sar" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 18 ✖

tax_clade 1

  • Sar · 18 ✖

bioproject 1

  • PRJNA784979 · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2488888 2488888 PRJNA784979_S_NODE_4402_length_225_cov_3.369318_g4360_i0 PRJNA784979 4402 225 3.369318 7.5809655 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 351 1.76e-92   NTclustered gi|338798067|gb|HQ665128.1| 82934 g4360 i0 95.872 96.4177777777778 218 8 97 1 8 225 772 556 Pythium coloratum isolate CBS 154.64 28S large subunit ribosomal RNA gene, partial sequence blastn 21694 351 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium coloratum
5869027 5869027 PRJNA784979_S_NODE_11505_length_164_cov_4.513043_g11463_i0 PRJNA784979 11505 164 4.513043 7.40139052 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 272 9.65e-69   NTclustered gi|33520250|gb|AY273995.1| 92964 g11463 i0 97.5 34.6768292682927 160 3 98 1 1 160 553 711 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 5687 272 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
6317367 6317367 PRJNA784979_S_NODE_13665_length_158_cov_3.844037_g13623_i0 PRJNA784979 13665 158 3.844037 6.07357846 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 263 5.54e-66   NTclustered gi|531037395|gb|AY598672.2| 4798 g13623 i0 98.026 96.1962025316456 152 2 96 1 2 153 1633 1483 Pythium hydnosporum strain CBS 253.60 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15199 263 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium hydnosporum
7144016 7144016 PRJNA784979_S_NODE_2046_length_325_cov_1.568841_g2004_i0 PRJNA784979 2046 325 1.568841 5.09873325 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 547 3.199999999999999e-151   NTclustered gi|33520250|gb|AY273995.1| 92964 g2004 i0 97.792 92.2769230769231 317 7 98 0 3 319 433 117 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 29990 547 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
7144051 7144051 PRJNA784979_S_NODE_8046_length_181_cov_3.727273_g8004_i0 PRJNA784979 8046 181 3.727273 6.74636413 Pythium sp. AP 378252 SAR_Eukaryotes SAR_Eukaryotes 257 3.04e-64   NTclustered gi|90855438|dbj|AB254193.1| 378252 g8004 i0 93.678 31.4088397790055 174 7 95 3 10 181 77 248 Pythium sp. AP genes for 28S rRNA, IGS, 5S rRNA, partial and complete sequence, strain: AP-1, AP-2 and AP-3 blastn 5685 257 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium sp. AP
12693060 12693060 PRJNA784979_S_NODE_1850_length_346_cov_3.074074_g1808_i0 PRJNA784979 1850 346 3.074074 10.63629604 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 617 2.5699999999999998e-172   NTclustered gi|505574769|gb|AY598634.2| 82936 g1808 i0 99.412 99.9537572254335 340 2 98 0 6 345 933 594 Pythium dissotocum strain CBS 166.68 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 34584 621 0.993558776167472 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium dissotocum
13967307 13967307 PRJNA784979_S_NODE_2371_length_299_cov_1.924000_g2329_i0 PRJNA784979 2371 299 1.924 5.75276 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 455 1.81e-123   NTclustered gi|292680097|dbj|AB468703.1| 82936 g2329 i0 100 82.2775919732441 246 0 82 0 49 294 32 277 Pythium dissotocum gene for large subunit ribosomal RNA, partial sequence, strain: UZ159 blastn 24601 455 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium dissotocum
15241859 15241859 PRJNA784979_S_NODE_9992_length_168_cov_1.378151_g9950_i0 PRJNA784979 9992 168 1.378151 2.31529368 Globisporangium 1448052 SAR_Eukaryotes SAR_Eukaryotes 305 9.81e-79   NTclustered gi|505574786|gb|AY598655.2| 82926 g9950 i0 100 98.1964285714286 165 0 98 0 4 168 3867 4031 Globisporangium splendens strain CBS 462.48 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16497 305 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
17791116 17791116 PRJNA784979_S_NODE_9294_length_172_cov_2.089431_g9252_i0 PRJNA784979 9294 172 2.089431 3.59382132 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 254 3.68e-63   NTclustered gi|2661426469|ref|XR_009934769.1| 403677 g9252 i0 93.529 96.8430232558139 170 11 99 0 3 172 1625 1794 Phytophthora infestans T30-4 28S ribosomal RNA (PITG_33375), rRNA blastn 16657 254 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
20339798 20339798 PRJNA784979_S_NODE_6576_length_195_cov_1.280822_g6534_i0 PRJNA784979 6576 195 1.280822 2.4976029 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 339 1.15e-88   NTclustered gi|338798216|gb|HQ665277.1| 135481 g6534 i0 98.947 97.451282051282 190 1 97 1 5 194 827 1015 Lagenidium caudatum isolate CBS 584.85 28S large subunit ribosomal RNA gene, partial sequence blastn 19003 339 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium caudatum
23718394 23718394 PRJNA784979_S_NODE_6079_length_200_cov_2.231788_g6037_i0 PRJNA784979 6079 200 2.231788 4.463576 Leptolegnia sp. CBS 177.86 170620 SAR_Eukaryotes SAR_Eukaryotes 239 1.24e-58   NTclustered gi|17224985|gb|AF320588.1| 170620 g6037 i0 94.231 79.71 156 9 78 0 13 168 856 701 Leptolegnia sp. CBS177.86 28S ribosomal RNA gene, partial sequence blastn 15942 239 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Leptolegnia Leptolegnia sp. CBS 177.86
26832176 26832176 PRJNA784979_S_NODE_5821_length_204_cov_1.077419_g5779_i0 PRJNA784979 5821 204 1.077419 2.19793476 Phytophthora lilii 2077276 SAR_Eukaryotes SAR_Eukaryotes 69.7 6.71e-12   NR GMF31033.1 2077276 g5779 i0 56.1 0.838235294117647 57 25 83.8 0 199 29 113 169 GMF31033.1 unnamed protein product [Phytophthora lilii] diamond 171 69.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora lilii
27116641 27116641 PRJNA784979_S_NODE_9382_length_172_cov_1.130081_g9340_i0 PRJNA784979 9382 172 1.130081 1.94373932 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 73.9 6.12e-14   NR KAF4128241.1 4787 g9340 i0 60.7 0.976744186046512 56 21 97.7 1 170 3 27 81 KAF4128241.1 hypothetical protein GN958_ATG22563 [Phytophthora infestans] diamond 168 73.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
27464609 27464609 PRJNA784979_S_NODE_8223_length_180_cov_1.877863_g8181_i0 PRJNA784979 8223 180 1.877863 3.3801534 Phytophthora fragariae 53985 SAR_Eukaryotes SAR_Eukaryotes 58.5 4.14e-8   NR KAE9302619.1 53985 g8181 i0 77.1 0.8 48 10 78.3 1 148 8 34 81 KAE9302619.1 hypothetical protein PF008_g22450 [Phytophthora fragariae] diamond 144 58.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
30189257 30189257 PRJNA784979_S_NODE_10592_length_166_cov_1.811966_g10550_i0 PRJNA784979 10592 166 1.811966 3.00786356 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 63.9 4.1e-10   NR KAF4128246.1 4787 g10550 i0 60.7 6.05421686746988 56 19 97.6 2 3 164 67 121 KAF4128246.1 hypothetical protein GN958_ATG22568 [Phytophthora infestans] diamond 1005 63.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
30852784 30852784 PRJNA784979_S_NODE_6494_length_196_cov_1.034014_g6452_i0 PRJNA784979 6494 196 1.034014 2.02666744 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 63.5 7.12e-11   NR KAF4128243.1 4787 g6452 i0 40.3 2.05102040816327 67 38 99.5 1 195 1 57 123 KAF4128243.1 hypothetical protein GN958_ATG22565 [Phytophthora infestans] diamond 402 63.9 0.993740219092332 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
31064965 31064965 PRJNA784979_S_NODE_5335_length_210_cov_1.136646_g5293_i0 PRJNA784979 5335 210 1.136646 2.3869566 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 76.6 2.02e-14   NR KAF0714686.1 120398 g5293 i0 53.8 0.928571428571429 65 28 90 1 199 11 283 347 KAF0714686.1 hypothetical protein As57867_003739 [Aphanomyces stellatus] diamond 195 76.6 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
32424874 32424874 PRJNA784979_S_NODE_5059_length_214_cov_1.539394_g5017_i0 PRJNA784979 5059 214 1.539394 3.29430316 Phytophthora fragariaefolia 1490495 SAR_Eukaryotes SAR_Eukaryotes 49.7 8.93e-5   NR GMF22350.1 1490495 g5017 i0 56.9 0.714953271028037 51 21 70.1 1 152 3 184 234 GMF22350.1 unnamed protein product [Phytophthora fragariaefolia] diamond 153 49.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariaefolia

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;