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contig_metadata

16 rows where bioproject = "PRJNA784979", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 16 ✖

tax_clade 1

  • Sar · 16 ✖

bioproject 1

  • PRJNA784979 · 16 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1213375 1213375 PRJNA784979_S_NODE_7261_length_188_cov_2.035971_g7219_i0 PRJNA784979 7261 188 2.035971 3.82762548 root 1 Root_unresolved Root_unresolved 237 4.14e-58   NTclustered gi|10832|emb|X54512.1| 5911 g7219 i0 89.73 21.9095744680851 185 19 98 0 1 185 6925 6741 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 4119 237 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
4593820 4593820 PRJNA784979_S_NODE_3544_length_246_cov_1.964467_g3502_i0 PRJNA784979 3544 246 1.964467 4.83258882 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 401 1.9199999999999992e-107   NTclustered gi|10782|emb|X54004.1| 5908 g3502 i0 97.458 73.0040650406504 236 4 95 2 1 234 2952 3187 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 17959 401 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
5869063 5869063 PRJNA784979_S_NODE_4525_length_223_cov_1.649425_g4483_i0 PRJNA784979 4525 223 1.649425 3.67821775 uncultured Peritrichia 282477 SAR_Eukaryotes SAR_Eukaryotes 383 6.18e-102   NTclustered gi|1002824186|gb|KU363289.1| 282477 g4483 i0 98.618 97.1345291479821 217 2 97 1 7 223 301 86 Uncultured Peritrichia clone OTU71lengt small subunit ribosomal RNA gene, partial sequence blastn 21661 383 1 Eukaryota Sar   Ciliophora Oligohymenophorea       uncultured Peritrichia
7591500 7591500 PRJNA784979_S_NODE_9266_length_172_cov_6.756098_g9224_i0 PRJNA784979 9266 172 6.756098 11.62048856 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 302 1.3e-77   NTclustered gi|2001232452|gb|MW727123.1| 5893 g9224 i0 100 94.7674418604651 163 0 95 0 5 167 130 292 Tetrahymena borealis isolate 20766-1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence; macronuclear blastn 16300 302 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena borealis
8418687 8418687 PRJNA784979_S_NODE_6207_length_199_cov_1.666667_g6165_i0 PRJNA784979 6207 199 1.666667 3.31666733 Tetrahymena rostrata 5909 SAR_Eukaryotes SAR_Eukaryotes 305 1.2e-78   NTclustered gi|1837628855|gb|MN158348.1| 5909 g6165 i0 95.312 7.90452261306533 192 9 96 0 8 199 5211 5020 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 1573 305 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
9693918 9693918 PRJNA784979_S_NODE_3508_length_247_cov_1.929293_g3466_i0 PRJNA784979 3508 247 1.929293 4.76535371 Planilamina ovata 2684848 SAR_Eukaryotes SAR_Eukaryotes 291 4.35e-74   NTclustered gi|1784308423|gb|MN830171.1| 2684848 g3466 i0 92.271 5.2914979757085 207 13 83 3 42 247 514 718 Planilamina ovata isolate LJ-II-20170502 large subunit ribosomal RNA gene, partial sequence blastn 1307 291 1 Eukaryota Sar   Ciliophora Phyllopharyngea Dysteriida Kyaroikeidae Planilamina Planilamina ovata
15241757 15241757 PRJNA784979_S_NODE_10092_length_167_cov_2.474576_g10050_i0 PRJNA784979 10092 167 2.474576 4.13254192 Hymenostomatida 31277 SAR_Eukaryotes SAR_Eukaryotes 292 7.58e-75   NTclustered gi|2624665746|gb|OR878271.1| 210825 g10050 i0 100 61.4850299401198 158 0 95 0 10 167 1168 1325 Glaucoma scintillans isolate LLH20220320 large subunit ribosomal RNA gene, partial sequence blastn 10268 292 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Glaucomidae Glaucoma Glaucoma scintillans
16068058 16068058 PRJNA784979_S_NODE_3133_length_261_cov_2.452830_g3091_i0 PRJNA784979 3133 261 2.45283 6.4018863 Philasterides dicentrarchi 282688 SAR_Eukaryotes SAR_Eukaryotes 135 2.3e-27   NTclustered gi|49616744|gb|AY643504.1| 282688 g3091 i0 86.4 1.79693486590038 125 16 48 1 134 257 101 225 Philasterides dicentrarchi 26S ribosomal RNA gene, partial sequence blastn 469 135 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Philasteridae Philasterides Philasterides dicentrarchi
18617144 18617144 PRJNA784979_S_NODE_9895_length_169_cov_0.716667_g9853_i0 PRJNA784979 9895 169 0.716667 1.21116723 Homalozoon vermiculare 39461 SAR_Eukaryotes SAR_Eukaryotes 250 4.66e-62   NTclustered gi|1226859312|gb|MF474355.1| 39461 g9853 i0 95.513 29.8757396449704 156 7 92 0 6 161 1515 1360 Homalozoon vermiculare isolate LXT2013110507 large subunit ribosomal RNA gene, partial sequence blastn 5049 250 1 Eukaryota Sar   Ciliophora Litostomatea Haptorida Homalozoonidae Homalozoon Homalozoon vermiculare
19065090 19065090 PRJNA784979_S_NODE_5475_length_208_cov_1.427673_g5433_i0 PRJNA784979 5475 208 1.427673 2.96955984 Philaster 669199 SAR_Eukaryotes SAR_Eukaryotes 331 2.0900000000000002e-86   NTclustered gi|390988051|gb|JN885119.1| 1198315 g5433 i0 96.954 87.6923076923077 197 6 95 0 8 204 1831 1635 Philaster apodigitiformis isolate WYG2007053101 large subunit ribsomal RNA gene, partial sequence blastn 18240 331 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Philasteridae Philaster Philaster apodigitiformis
19892376 19892376 PRJNA784979_S_NODE_4416_length_225_cov_1.471591_g4374_i0 PRJNA784979 4416 225 1.471591 3.31107975 Tetrahymena rostrata 5909 SAR_Eukaryotes SAR_Eukaryotes 335 1.7699999999999994e-87   NTclustered gi|1837628855|gb|MN158348.1| 5909 g4374 i0 97.462 83.0533333333333 197 4 88 1 1 197 4485 4290 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 18687 335 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
21168069 21168069 PRJNA784979_S_NODE_13777_length_157_cov_2.231481_g13735_i0 PRJNA784979 13777 157 2.231481 3.50342517 Philaster apodigitiformis 1198315 SAR_Eukaryotes SAR_Eukaryotes 243 7.159999999999999e-60   NTclustered gi|390988051|gb|JN885119.1| 1198315 g13735 i0 96.575 42.1464968152866 146 5 93 0 7 152 804 659 Philaster apodigitiformis isolate WYG2007053101 large subunit ribsomal RNA gene, partial sequence blastn 6617 243 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Philasteridae Philaster Philaster apodigitiformis
21615556 21615556 PRJNA784979_S_NODE_10977_length_165_cov_4.482759_g10935_i0 PRJNA784979 10977 165 4.482759 7.39655235 root 1 Root_unresolved Root_unresolved 289 9.66e-74   NTclustered gi|1837628855|gb|MN158348.1| 5909 g10935 i0 100 94.0424242424242 156 0 95 0 4 159 5185 5340 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15517 289 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
22891021 22891021 PRJNA784979_S_NODE_14158_length_151_cov_2.862745_g14116_i0 PRJNA784979 14158 151 2.862745 4.32274495 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 257 2.43e-64   NTclustered gi|2624665746|gb|OR878271.1| 210825 g14116 i0 98.621 96 145 2 96 0 1 145 700 844 Glaucoma scintillans isolate LLH20220320 large subunit ribosomal RNA gene, partial sequence blastn 14496 257 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Glaucomidae Glaucoma Glaucoma scintillans
22891063 22891063 PRJNA784979_S_NODE_5938_length_202_cov_1.764706_g5896_i0 PRJNA784979 5938 202 1.764706 3.56470612 Vorticella 60849 SAR_Eukaryotes SAR_Eukaryotes 348 2e-91   NTclustered gi|363412153|gb|JN120227.1| 60850 g5896 i0 99.476 94.5544554455445 191 1 95 0 7 197 1460 1270 Vorticella convallaria isolate 96Vorsp16 18S ribosomal RNA gene, partial sequence blastn 19100 348 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella convallaria
24992003 24992003 PRJNA784979_S_NODE_4080_length_232_cov_1.278689_g4038_i0 PRJNA784979 4080 232 1.278689 2.96655848 Kyaroikeus paracetarius 2684852 SAR_Eukaryotes SAR_Eukaryotes 189 1.5199999999999996e-43   NTclustered gi|1784308422|gb|MN830170.1| 2684852 g4038 i0 87.349 4.81896551724138 166 19 71 2 68 232 1 165 Kyaroikeus paracetarius isolate LJ-I-20170502 large subunit ribosomal RNA gene, partial sequence blastn 1118 189 1 Eukaryota Sar   Ciliophora Phyllopharyngea Dysteriida Kyaroikeidae Kyaroikeus Kyaroikeus paracetarius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;