RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA784979", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA784979 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2041468 2041468 PRJNA784979_S_NODE_5842_length_203_cov_2.714286_g5800_i0 PRJNA784979 5842 203 2.714286 5.51000058 Plasmodium sp. gorilla clade G2 880535 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.001   NTclustered gi|1620167712|ref|XM_028681606.1| 880535 g5800 i0 94.595 0.182266009852217 37 1 18 1 26 61 15000 14964 Plasmodium sp. gorilla clade G2 E3 ubiquitin-protein ligase, putative (PADL01_0825300), partial mRNA blastn 37 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp. gorilla clade G2
3316844 3316844 PRJNA784979_S_NODE_8163_length_181_cov_1.000000_g8121_i0 PRJNA784979 8163 181 1 1.81 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 80.5 7.05e-11   NTclustered gi|1931714359|ref|XR_552297.2| 54757 g8121 i0 87.324 19.6243093922652 71 8 39 1 41 110 4102 4032 Plasmodium vinckei vinckei ribosomal RNA (PVVCY_0502190), rRNA blastn 3552 80.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
4593823 4593823 PRJNA784979_S_NODE_3844_length_237_cov_6.372340_g3802_i0 PRJNA784979 3844 237 6.37234 15.1024458 Apicomplexa sp. corallicolid ex Madracis mirabilis 3391652 SAR_Eukaryotes SAR_Eukaryotes 274 4.17e-69   NTclustered gi|2887157059|gb|PQ871573.1| 3391652 g3802 i0 89.862 63.7552742616034 217 17 91 4 19 233 1188 1401 Apicomplexa sp. corallicolid ex Madracis mirabilis isolate M2_7040_S9 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 15110 274 1 Eukaryota Sar   Apicomplexa         Apicomplexa sp. corallicolid ex Madracis mirabilis
12693096 12693096 PRJNA784979_S_NODE_6310_length_198_cov_1.295302_g6268_i0 PRJNA784979 6310 198 1.295302 2.56469796 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 344 2.53e-90   NTclustered gi|2866450392|gb|PQ722881.1| 35084 g6268 i0 98.964 96.1161616161616 193 1 97 1 2 193 789 597 Babesia sp. isolate YN-4 WX-T-165 small subunit ribosomal RNA gene, partial sequence blastn 19031 344 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;