RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA784979", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA784979 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9693915 9693915 PRJNA784979_S_NODE_2928_length_269_cov_6.650000_g2886_i0 PRJNA784979 2928 269 6.65 17.8885 Acrostichus floridensis 1936243 Nematoda Nematoda 291 4.8000000000000006e-74   NTclustered gi|1375380822|dbj|LC374587.1| 1936243 g2886 i0 96.571 51.8698884758364 175 6 75 0 92 266 1568 1742 Acrostichus floridensis NKZ366 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 13953 291 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus floridensis
16516308 16516308 PRJNA784979_S_NODE_5113_length_213_cov_1.823171_g5071_i0 PRJNA784979 5113 213 1.823171 3.88335423 Diplogasteridae 50861 Nematoda Nematoda 228 2.8999999999999996e-55   NTclustered gi|158821919|gb|EU195983.1| 49349 g5071 i0 86.256 52.4460093896714 211 27 98 1 5 213 2073 2283 Aduncospiculum halicti strain JB120 28S ribosomal RNA gene, partial sequence blastn 11171 228 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Aduncospiculum Aduncospiculum halicti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;