RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA784979", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA784979 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5869076 5869076 PRJNA784979_S_NODE_7985_length_182_cov_1.496241_g7943_i0 PRJNA784979 7985 182 1.496241 2.72315862 Leptochiton asellus 211853 Mollusca Mollusca 76.8 9.19e-10   NTclustered gi|34369208|gb|AY145414.1| 211853 g7943 i0 80.769 2.98901098901099 104 14 56 6 81 182 2717 2618 Leptochiton asellus 28S ribosomal RNA gene, partial sequence blastn 544 76.8 1 Eukaryota Opisthokonta Metazoa Mollusca Polyplacophora Lepidopleurida Lepidopleuridae Leptochiton Leptochiton asellus
21615553 21615553 PRJNA784979_S_NODE_10597_length_166_cov_1.743590_g10555_i0 PRJNA784979 10597 166 1.74359 2.8943594 Metazoa 33208 Mollusca Mollusca 307 2.69e-79   NTclustered gi|1928112766|gb|MT947789.1| 6523 g10555 i0 100 99.9036144578313 166 0 100 0 1 166 291 126 Lymnaea stagnalis isolate Lsta_466444 hypothetical protein mRNA, complete cds blastn 16584 307 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;