RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA784298" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA784298 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21615432 21615432 PRJNA784298_P_NODE_21257_length_267_cov_1.061856_g21056_i0 PRJNA784298 21257 267 1.061856 2.83515552 Gemmatimonas 173479 Bacteria Bacteria 372 1.65e-98   NTclustered gi|470475286|ref|NR_076270.1| 173480 g21056 i0 91.791 12.2996254681648 268 20 100 2 1 267 1507 1241 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 3284 372 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
23718214 23718214 PRJNA784298_P_NODE_25279_length_246_cov_0.890173_g25078_i0 PRJNA784298 25279 246 0.890173 2.18982558 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 342 1.1799999999999997e-89   NTclustered gi|575456455|gb|CP007128.1| 861299 g25078 i0 91.837 287.715447154472 245 20 99 0 2 246 3044382 3044626 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 70778 342 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
30527503 30527503 PRJNA784298_P_NODE_19453_length_280_cov_1.787440_g19252_i0 PRJNA784298 19453 280 1.78744 5.004832 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 60.8 2.41e-8   NR HEX7239240.1 3047548 g19252 i0 40.7 0.975 91 45 97.5 3 8 280 150 231 HEX7239240.1 glycosyl hydrolase family 28-related protein [Longimicrobiaceae bacterium] diamond 273 60.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
32551656 32551656 PRJNA784298_P_NODE_179_length_2828_cov_3.652632_g146_i0 PRJNA784298 179 2828 3.652632 103.29643296 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 76.6 8.27e-12   NR HEX7239832.1 3047548 g146 i0 35.3 0.159123055162659 150 77 15 6 281 703 12 150 HEX7239832.1 HAD family acid phosphatase [Longimicrobiaceae bacterium] diamond 450 76.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;