RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA784298" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA784298 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7143870 7143870 PRJNA784298_P_NODE_26946_length_241_cov_0.898810_g26745_i0 PRJNA784298 26946 241 0.89881 2.1661321 Chlorobiota bacterium 2268192 Bacteria Bacteria 100 2.2700000000000003e-22   NR NPA08276.1 2268192 g26745 i0 61.6 1.81742738589212 73 28 90.9 0 9 227 470 542 NPA08276.1 SusC/RagA family TonB-linked outer membrane protein [Chlorobiota bacterium] diamond 438 100 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
29705734 29705734 PRJNA784298_P_NODE_13850_length_335_cov_2.290076_g13649_i0 PRJNA784298 13850 335 2.290076 7.6717546 Chlorobium phaeobacteroides 1096 Bacteria Bacteria 118 7.7399999999999995e-31   NR WP_011744526.1 1096 g13649 i0 67.9 0.725373134328358 81 26 72.5 0 329 87 107 187 WP_011744526.1 DUF1643 domain-containing protein [Chlorobium phaeobacteroides] diamond 243 118 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides
29832474 29832474 PRJNA784298_P_NODE_13851_length_335_cov_2.270992_g13650_i0 PRJNA784298 13851 335 2.270992 7.6078232 Chlorobium phaeobacteroides 1096 Bacteria Bacteria 98.6 3.7e-23   NR WP_011744526.1 1096 g13650 i0 63.9 0.546268656716418 61 22 54.6 0 184 2 1 61 WP_011744526.1 DUF1643 domain-containing protein [Chlorobium phaeobacteroides] diamond 183 98.6 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides
30338443 30338443 PRJNA784298_P_NODE_25612_length_245_cov_0.895349_g25411_i0 PRJNA784298 25612 245 0.895349 2.19360505 Chlorobiota bacterium 2268192 Bacteria Bacteria 105 9.39e-25   NR NOY95828.1 2268192 g25411 i0 59.7 1.86122448979592 72 29 88.2 0 216 1 109 180 NOY95828.1 glycosyltransferase [Chlorobiota bacterium] diamond 456 105 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;