RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where bioproject = "PRJNA784298", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 14 ✖

tax_phylum 1

  • Acidobacteriota · 14 ✖

tax_kingdom 1

bioproject 1

  • PRJNA784298 · 14 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2041368 2041368 PRJNA784298_P_NODE_6002_length_516_cov_158.866817_g5802_i0 PRJNA784298 6002 516 158.866817 819.75277572 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 54.7 0.014   NTclustered gi|2874254114|emb|OY970199.1| 194844 g5802 i0 100 0.0562015503875969 29 0 6 0 451 479 42654 42682 MAG: uncultured Acidobacteriaceae bacterium isolate MFD04463.bin.1.15 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
8418470 8418470 PRJNA784298_P_NODE_22807_length_256_cov_2.278689_g22606_i0 PRJNA784298 22807 256 2.278689 5.83344384 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 446 9.139999999999999e-121   NTclustered gi|2874253721|emb|OY969563.1| 2952895 g22606 i0 98.047 98.03515625 256 5 100 0 1 256 636604 636859 MAG: Candidatus Acidoferrales bacterium isolate MFD05580.bin.1.43 genome assembly, chromosome: 1 blastn 25097 446 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
9693571 9693571 PRJNA784298_P_NODE_10808_length_381_cov_1.714286_g10607_i0 PRJNA784298 10808 381 1.714286 6.53142966 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 133 1.11e-34   NR HEX4168328.1 2212468 g10607 i0 67.7 2.16535433070866 93 29 73.2 1 279 1 6 97 HEX4168328.1 ATP-binding protein [Bryobacteraceae bacterium] diamond 825 133 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
12244841 12244841 PRJNA784298_P_NODE_12910_length_347_cov_2.386861_g12709_i0 PRJNA784298 12910 347 2.386861 8.28240767 Acidobacteriota bacterium 1978231 Bacteria Bacteria 228 5.089999999999998e-55   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g12709 i0 81.979 3.59654178674352 283 38 81 11 68 347 3097160 3097432 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 1248 228 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
12245036 12245036 PRJNA784298_P_NODE_4970_length_568_cov_11.367677_g4771_i0 PRJNA784298 4970 568 11.367677 64.56840536 Thermotomaculum hydrothermale 981385 Bacteria Bacteria 102 8.41e-25   NR WP_269089408.1 981385 g4771 i0 53.8 3.30633802816901 93 43 49.1 0 482 204 2 94 WP_269089408.1 HU family DNA-binding protein [Thermotomaculum hydrothermale] diamond 1878 102 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Thermotomaculales Thermotomaculaceae Thermotomaculum Thermotomaculum hydrothermale
13519035 13519035 PRJNA784298_P_NODE_12931_length_347_cov_1.649635_g12730_i0 PRJNA784298 12931 347 1.649635 5.72423345 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 619 7.179999999999999e-173   NTclustered gi|2874253786|emb|OY969770.1| 2952895 g12730 i0 98.847 119.706051873199 347 4 100 0 1 347 3515005 3514659 MAG: Candidatus Acidoferrales bacterium isolate MFD09222.bin.1.52 genome assembly, chromosome: 1 blastn 41538 619 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
16067834 16067834 PRJNA784298_P_NODE_21353_length_266_cov_1.772021_g21152_i0 PRJNA784298 21353 266 1.772021 4.71357586 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 364 2.7499999999999986e-96   NTclustered gi|2131941663|dbj|AP025252.1| 2802972 g21152 i0 91.353 174.496240601504 266 23 100 0 1 266 636153 635888 Bryobacterales bacterium F-183 DNA, nearly complete genome blastn 46416 364 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
24991741 24991741 PRJNA784298_P_NODE_17000_length_300_cov_5.114537_g16799_i0 PRJNA784298 17000 300 5.114537 15.343611 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 444 3.94e-120   NTclustered gi|2874253721|emb|OY969563.1| 2952895 g16799 i0 93.333 3.89333333333333 300 20 100 0 1 300 4772946 4773245 MAG: Candidatus Acidoferrales bacterium isolate MFD05580.bin.1.43 genome assembly, chromosome: 1 blastn 1168 444 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
26619719 26619719 PRJNA784298_P_NODE_6601_length_493_cov_3.623810_g6401_i0 PRJNA784298 6601 493 3.62381 17.8653833 Bacteria 2 Bacteria Bacteria 94 3.54e-19   NR MEA2490291.1 1978231 g6401 i0 42.7 1.3448275862069 110 59 65.7 2 417 94 111 218 MEA2490291.1 hypothetical protein [Acidobacteriota bacterium] diamond 663 94.7 0.992608236536431 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27874855 27874855 PRJNA784298_P_NODE_27505_length_233_cov_2.887500_g27304_i0 PRJNA784298 27505 233 2.8875 6.727875 Acidobacteriota bacterium 1978231 Bacteria Bacteria 100 6.06e-25   NR MBI3131636.1 1978231 g27304 i0 61.4 0.901287553648069 70 27 90.1 0 20 229 6 75 MBI3131636.1 SUF system NifU family Fe-S cluster assembly protein [Acidobacteriota bacterium] diamond 210 100 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30031399 30031399 PRJNA784298_P_NODE_5671_length_532_cov_1.856209_g5472_i0 PRJNA784298 5671 532 1.856209 9.87503188 root 1 Root_unresolved Root_unresolved 62.4 1.03e-7   NR MBZ5537623.1 2081523 g5472 i0 32.2 2.53759398496241 146 89 76.7 4 33 440 909 1054 MBZ5537623.1 IPT/TIG domain-containing protein [Terriglobia bacterium] diamond 1350 62.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
30622210 30622210 PRJNA784298_P_NODE_20273_length_274_cov_1.532338_g20072_i0 PRJNA784298 20273 274 1.532338 4.19860612 Candidatus Solibacter sp. 2068625 Bacteria Bacteria 77 4.07e-14   NR HJZ96235.1 2068625 g20072 i0 41.1 1.97080291970803 90 51 96.4 2 266 3 23 112 HJZ96235.1 hypothetical protein [Candidatus Solibacter sp.] diamond 540 77 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter sp.
31001591 31001591 PRJNA784298_P_NODE_26134_length_243_cov_0.905882_g25933_i0 PRJNA784298 26134 243 0.905882 2.20129326 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 150 8.279999999999999e-43   NR HEY3044869.1 2910147 g25933 i0 86.3 5.92592592592593 80 11 98.8 0 3 242 10 89 HEY3044869.1 Gfo/Idh/MocA family oxidoreductase [Vicinamibacterales bacterium] diamond 1440 150 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
31665402 31665402 PRJNA784298_P_NODE_18657_length_286_cov_2.408451_g18456_i0 PRJNA784298 18657 286 2.408451 6.88816986 Candidatus Acidiferrum sp. 3069120 Bacteria Bacteria 41.2 0.0354   NR HMJ88716.1 3069120 g18456 i0 38.6 0.870629370629371 83 35 76.6 2 2 220 1 77 HMJ88716.1 hypothetical protein [Candidatus Acidiferrum sp.] diamond 249 41.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales   Candidatus Acidiferrum Candidatus Acidiferrum sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;