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contig_metadata

8 rows where bioproject = "PRJNA784298", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA784298 · 8 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9693593 9693593 PRJNA784298_P_NODE_12928_length_347_cov_1.686131_g12727_i0 PRJNA784298 12928 347 1.686131 5.85087457 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 157 9.349999999999999e-42   NR MFC1868133.1 2202153 g12727 i0 60 2.98270893371758 115 46 99.4 0 347 3 42 156 MFC1868133.1 leucine--tRNA ligase [Thermodesulfobacteriota bacterium] diamond 1035 157 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
26895657 26895657 PRJNA784298_P_NODE_7201_length_471_cov_1.316583_g7000_i0 PRJNA784298 7201 471 1.316583 6.20110593 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 68.6 3.88e-10   NR MEN8136170.1 2202153 g7000 i0 34.7 1.94267515923567 150 79 89.2 7 50 469 125 265 MEN8136170.1 hypothetical protein [Thermodesulfobacteriota bacterium] diamond 915 68.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
27284205 27284205 PRJNA784298_P_NODE_22163_length_261_cov_0.861702_g21962_i0 PRJNA784298 22163 261 0.861702 2.24904222 Pseudomonadati 3379134 Bacteria Bacteria 57.4 3.31e-7   NR MEW6136806.1 2202153 g21962 i0 34.1 3.68965517241379 82 54 94.3 0 249 4 618 699 MEW6136806.1 response regulator [Thermodesulfobacteriota bacterium] diamond 963 57.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
27654055 27654055 PRJNA784298_P_NODE_164_length_2918_cov_11.550088_g133_i0 PRJNA784298 164 2918 11.550088 337.03156784 Geomonas nitrogeniifigens 2843197 Bacteria Bacteria 278 1.49e-80   NR WP_217299618.1 2847991 g133 i0 46.7 0.970527758738862 315 164 32 4 2918 1986 92 406 WP_217299618.1 alanine racemase [Geomonas nitrogeniifigens] diamond 2832 278 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas nitrogeniifigens
27748877 27748877 PRJNA784298_P_NODE_224_length_2611_cov_5.536643_g185_i0 PRJNA784298 224 2611 5.536643 144.56174873 Geomonas fuzhouensis 2847989 Bacteria Bacteria 316 5.26e-97   NR WP_224957445.1 2873701 g185 i0 53.2 0.682497127537342 297 137 33.9 1 1823 939 3 299 WP_224957445.1 branched-chain amino acid transaminase [Geomonas fuzhouensis] diamond 1782 316 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas fuzhouensis
29210458 29210458 PRJNA784298_P_NODE_27929_length_228_cov_2.670968_g27728_i0 PRJNA784298 27929 228 2.670968 6.08980704 Pseudomonadati 3379134 Bacteria Bacteria 58.2 1.04e-7   NR WP_214172953.1 60036 g27728 i0 47.7 1.73684210526316 65 34 85.5 0 34 228 5 69 WP_214172953.1 glycosyltransferase family 2 protein [Geoanaerobacter pelophilus] diamond 396 58.5 0.994871794871795 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geoanaerobacter Geoanaerobacter pelophilus
29905113 29905113 PRJNA784298_P_NODE_3951_length_640_cov_3.991182_g3754_i0 PRJNA784298 3951 640 3.991182 25.5435648 Pseudomonadati 3379134 Bacteria Bacteria 51.6 1.05e-4   NR WP_347288965.1 35833 g3754 i0 38 2.0203125 79 48 36.6 1 531 298 35 113 WP_347288965.1 GNAT family N-acetyltransferase [Bilophila wadsworthia] diamond 1293 52 0.992307692307692 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bilophila Bilophila wadsworthia
32529242 32529242 PRJNA784298_P_NODE_23899_length_250_cov_1.875706_g23698_i0 PRJNA784298 23899 250 1.875706 4.689265 root 1 Root_unresolved Root_unresolved 90.1 9.99e-21   NR MCK9227634.1 2660714 g23698 i0 56.9 2.352 65 28 78 0 12 206 40 104 MCK9227634.1 DUF4326 domain-containing protein [Syntrophorhabdaceae bacterium] diamond 588 90.9 0.991199119911991 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae   Syntrophorhabdaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;