RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA784298", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA784298 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
765488 765488 PRJNA784298_P_NODE_6201_length_508_cov_2.340230_g6001_i0 PRJNA784298 6201 508 2.34023 11.8883684 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 678 0   NTclustered gi|2872995934|gb|CP176530.1| 3386277 g6001 i0 90.909 166.492125984252 506 44 99 2 1 504 699821 700326 Pseudobdellovibrio sp. HCB154 chromosome, complete genome blastn 84578 678 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
9693867 9693867 PRJNA784298_P_NODE_9528_length_407_cov_3.952096_g9327_i0 PRJNA784298 9528 407 3.952096 16.08503072 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 167 1.34e-36   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g9327 i0 83.505 1.02948402948403 194 17 47 9 216 407 2436345 2436525 Bdellovibrio sp. qaytius chromosome, complete genome blastn 419 167 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
11417226 11417226 PRJNA784298_P_NODE_9489_length_408_cov_4.662687_g9288_i0 PRJNA784298 9489 408 4.662687 19.02376296 Pseudomonadati 3379134 Bacteria Bacteria 143 2.26e-29   NTclustered gi|2621703983|emb|OY762938.1| 362447 g9288 i0 96.512 26.5514705882353 86 3 21 0 304 389 769874 769959 MAG: uncultured Micavibrio sp. isolate 194a20bb-105a-45c9-9846-0688499aae06 genome assembly, chromosome: 1 blastn 10833 143 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio uncultured Micavibrio sp.
18617008 18617008 PRJNA784298_P_NODE_3595_length_674_cov_2.432612_g3400_i0 PRJNA784298 3595 674 2.432612 16.39580488 Bdellovibrio sp. ZAP7 2231053 Bacteria Bacteria 337 1.6599999999999996e-87   NTclustered gi|1700693790|gb|CP030082.1| 2231053 g3400 i0 80.499 1.0326409495549 441 84 65 2 229 668 1325890 1326329 Bdellovibrio sp. ZAP7 chromosome, complete genome blastn 696 337 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. ZAP7
28758914 28758914 PRJNA784298_P_NODE_24167_length_249_cov_2.278409_g23966_i0 PRJNA784298 24167 249 2.278409 5.67323841 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 46.2 0.00105   NR NQZ02112.1 2053517 g23966 i0 38.7 2.5421686746988 62 36 72.3 1 33 212 42 103 NQZ02112.1 chemotaxis protein CheW [Bdellovibrionales bacterium] diamond 633 46.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30496094 30496094 PRJNA784298_P_NODE_14373_length_329_cov_1.105469_g14172_i0 PRJNA784298 14373 329 1.105469 3.63699301 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 161 1.92e-48   NR MBX9838926.1 2654442 g14172 i0 82.4 0.775075987841945 85 15 77.5 0 257 3 1 85 MBX9838926.1 hypothetical protein [Silvanigrellaceae bacterium] diamond 255 161 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
30590669 30590669 PRJNA784298_P_NODE_13033_length_346_cov_1.128205_g12832_i0 PRJNA784298 13033 346 1.128205 3.9035893 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 48.5 3.1e-4   NR MBX9839915.1 2654442 g12832 i0 35.9 0.676300578034682 78 43 62.4 2 253 38 44 120 MBX9839915.1 hypothetical protein [Silvanigrellaceae bacterium] diamond 234 48.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
31390306 31390306 PRJNA784298_P_NODE_25596_length_245_cov_0.895349_g25395_i0 PRJNA784298 25596 245 0.895349 2.19360505 Silvanigrella 2024975 Bacteria Bacteria 125 1.3399999999999996e-34   NR WP_233231179.1 1915309 g25395 i0 77.8 2.97551020408163 81 18 99.2 0 243 1 90 170 WP_233231179.1 50S ribosomal protein L10 [Silvanigrella aquatica] diamond 729 125 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Silvanigrella Silvanigrella aquatica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;