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contig_metadata

13 rows where bioproject = "PRJNA784298", tax_kingdom = "Metazoa" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 13 ✖

tax_kingdom 1

  • Metazoa · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA784298 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
765425 765425 PRJNA784298_P_NODE_26921_length_241_cov_0.916667_g26720_i0 PRJNA784298 26921 241 0.916667 2.20916747 Canis lupus 9612 Chordata Chordata 357 4.1099999999999997e-94   NTclustered gi|169118886|gb|AC186972.16| 9615 g26720 i0 93.697 14.2780082987552 238 15 99 0 1 238 90548 90785 Canis familiaris chromosome 25, clone XX-239F12, complete sequence blastn 3441 357 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
3316664 3316664 PRJNA784298_P_NODE_26223_length_243_cov_0.905882_g26022_i0 PRJNA784298 26223 243 0.905882 2.20129326 Phocoena sinus 42100 Chordata Chordata 139 1.63e-28   NTclustered gi|1814745512|ref|XM_032645097.1| 42100 g26022 i0 81.503 6.86008230452675 173 29 70 3 5 175 6538 6709 PREDICTED: Phocoena sinus transcription factor 20 (TCF20), transcript variant X1, mRNA blastn 1667 139 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Phocoenidae Phocoena Phocoena sinus
3316685 3316685 PRJNA784298_P_NODE_28583_length_201_cov_12.070312_g28382_i0 PRJNA784298 28583 201 12.070312 24.26132712 Ciona intestinalis 7719 Chordata Chordata 363 7.109999999999999e-96   NTclustered gi|11494226|gb|AF212177.1|AF212177 7719 g28382 i0 99.005 13.7512437810945 201 2 100 0 1 201 3583 3383 Ciona intestinalis 28S ribosomal RNA gene, partial sequence blastn 2764 363 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
5868926 5868926 PRJNA784298_P_NODE_28405_length_211_cov_12.268116_g28204_i0 PRJNA784298 28405 211 12.268116 25.88572476 Ciona intestinalis 7719 Chordata Chordata 390 3.459999999999999e-104   NTclustered gi|11494226|gb|AF212177.1|AF212177 7719 g28204 i0 100 81.1848341232227 211 0 100 0 1 211 1927 1717 Ciona intestinalis 28S ribosomal RNA gene, partial sequence blastn 17130 390 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
8418436 8418436 PRJNA784298_P_NODE_19967_length_276_cov_2.339901_g19766_i0 PRJNA784298 19967 276 2.339901 6.45812676 Mus musculus 10090 Chordata Chordata 52.8 0.025   NTclustered gi|76362865|gb|AC159225.4| 10090 g19766 i0 100 0.101449275362319 28 0 10 0 49 76 127371 127344 Mus musculus chromosome 1, clone RP24-306F17, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
9693680 9693680 PRJNA784298_P_NODE_19668_length_278_cov_11.790244_g19467_i0 PRJNA784298 19668 278 11.790244 32.77687832 Mus musculus 10090 Chordata Chordata 237 6.58e-58   NTclustered gi|2904935057|gb|PQ737980.1| 10090 g19467 i0 84.553 0.884892086330935 246 31 87 7 26 268 58 299 Mus musculus lncRNA390 lncRNA, complete sequence blastn 246 237 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22442672 22442672 PRJNA784298_P_NODE_23558_length_251_cov_2.595506_g23357_i0 PRJNA784298 23558 251 2.595506 6.51472006 Mus musculus 10090 Chordata Chordata 54.7 0.006   NTclustered gi|40809684|emb|AL844528.13| 10090 g23357 i0 100 0.115537848605578 29 0 12 0 175 203 120965 120937 Mouse DNA sequence from clone RP23-139H14 on chromosome 2, complete sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22442719 22442719 PRJNA784298_P_NODE_27978_length_227_cov_4.259740_g27777_i0 PRJNA784298 27978 227 4.25974 9.6696098 Ranitomeya imitator 111125 Chordata Chordata 97.1 9.21e-16   NTclustered gi|2851923300|ref|XM_069756950.1| 111125 g27777 i0 82.301 0.784140969162996 113 18 49 2 44 155 5177 5066 PREDICTED: Ranitomeya imitator mitochondrial fission regulator 1 like (MTFR1L), mRNA blastn 178 97.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
24164938 24164938 PRJNA784298_P_NODE_6419_length_500_cov_2.128806_g6219_i0 PRJNA784298 6419 500 2.128806 10.64403 Orectolobiformes 30503 Chordata Chordata 54.7 0.014   NTclustered gi|2250633359|ref|XM_048598961.1| 259920 g6219 i0 96.875 1.64 32 1 6 0 98 129 1935 1904 PREDICTED: Rhincodon typus bromodomain adjacent to zinc finger domain, 2Ba (baz2ba), transcript variant X2, mRNA blastn 820 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Rhincodontidae Rhincodon Rhincodon typus
24991842 24991842 PRJNA784298_P_NODE_26160_length_243_cov_0.905882_g25959_i0 PRJNA784298 26160 243 0.905882 2.20129326 Ciona intestinalis 7719 Chordata Chordata 388 1.47e-103   NTclustered gi|193788571|ref|NM_001129860.1| 7719 g25959 i0 95.473 1.7119341563786 243 11 100 0 1 243 1055 813 Ciona intestinalis zinc finger protein ZF(C3H/RING)-1 (zf(c3h/ring)-1), mRNA blastn 416 388 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
28190437 28190437 PRJNA784298_P_NODE_6806_length_485_cov_2.669903_g6606_i0 PRJNA784298 6806 485 2.669903 12.94902955 Rattus norvegicus 10116 Chordata Chordata 50.8 6.94e-4   NR AAS66221.1 10116 g6606 i0 31.4 0.865979381443299 140 70 79.8 9 425 39 1070 1194 AAS66221.1 LRRG00130 [Rattus norvegicus] diamond 420 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
29273251 29273251 PRJNA784298_P_NODE_22269_length_260_cov_1.625668_g22068_i0 PRJNA784298 22269 260 1.625668 4.2267368 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 134 2e-36   NR XP_069097964.1 8319 g22068 i0 73.3 95.0307692307692 86 23 99.2 0 3 260 24 109 XP_069097964.1 large ribosomal subunit protein uL18B-like [Pleurodeles waltl] diamond 24708 135 0.992592592592593 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
29895791 29895791 PRJNA784298_P_NODE_6911_length_481_cov_3.426471_g6710_i0 PRJNA784298 6911 481 3.426471 16.48132551 Ranitomeya imitator 111125 Chordata Chordata 65.9 3.31e-9   NR CAJ0925002.1 111125 g6710 i0 52.7 0.923076923076923 74 29 42.4 1 205 2 288 361 CAJ0925002.1 unnamed protein product, partial [Ranitomeya imitator] diamond 444 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;