RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA784298", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA784298 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28411775 28411775 PRJNA784298_P_NODE_3346_length_697_cov_2.961538_g3155_i0 PRJNA784298 3346 697 2.961538 20.64191986 Candidatus Izemoplasmatales bacterium 3018265 Bacteria Bacteria 125 9.07e-29   NR MFA5067204.1 3018265 g3155 i0 38.8 1.02008608321377 237 131 99.4 6 693 1 277 505 MFA5067204.1 vWA domain-containing protein [Candidatus Izemoplasmatales bacterium] diamond 711 125 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales     Candidatus Izemoplasmatales bacterium
28673602 28673602 PRJNA784298_P_NODE_8767_length_426_cov_1.266289_g8566_i0 PRJNA784298 8767 426 1.266289 5.39439114 FCB group 1783270 Bacteria Bacteria 142 3.06e-40   NR PKK92894.1 2013849 g8566 i0 82.1 9.38732394366197 84 15 59.2 0 31 282 65 148 PKK92894.1 MAG: hypothetical protein CVV61_07435 [Tenericutes bacterium HGW-Tenericutes-6] diamond 3999 142 1 Bacteria   Bacillati Mycoplasmatota         Tenericutes bacterium HGW-Tenericutes-6

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;