RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA784298", tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 2 ✖

bioproject 1

  • PRJNA784298 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4593483 4593483 PRJNA784298_P_NODE_11404_length_371_cov_1.701342_g11203_i0 PRJNA784298 11404 371 1.701342 6.31197882 Candidatus Stammera capleta 2608262 Bacteria Bacteria 91.6 7.47e-14   NTclustered gi|2676815364|gb|CP144825.1| 2608262 g11203 i0 84.615 1.86792452830189 91 14 25 0 34 124 162611 162521 MAG: Candidatus Stammera capleta isolate NMKNNIEB chromosome blastn 693 91.6 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
32339399 32339399 PRJNA784298_P_NODE_18499_length_288_cov_0.939535_g18298_i0 PRJNA784298 18499 288 0.939535 2.7058608 Candidatus Westeberhardia 1699619 Bacteria Bacteria 53.1 1.45e-5   NR MCR3754929.1 1594731 g18298 i0 32.9 4.61458333333333 79 51 82.3 1 279 43 341 417 MCR3754929.1 isoleucine--tRNA ligase [Candidatus Westeberhardia cardiocondylae] diamond 1329 53.1 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Westeberhardia Candidatus Westeberhardia cardiocondylae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;