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contig_metadata

9 rows where bioproject = "PRJNA784298", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA784298 · 9 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4593776 4593776 PRJNA784298_P_NODE_9904_length_399_cov_2.671779_g9703_i0 PRJNA784298 9904 399 2.671779 10.66039821 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 678 0   NTclustered gi|542687346|ref|NC_022178.1| 1202772 g9703 i0 97.264 108.666666666667 402 7 100 2 1 399 6323 5923 Achlya hypogyna mitochondrion, complete genome blastn 43358 678 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
6317133 6317133 PRJNA784298_P_NODE_11425_length_370_cov_25.771044_g11224_i0 PRJNA784298 11425 370 25.771044 95.3528628 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 678 0   NTclustered gi|363498776|gb|JN662487.1| 120398 g11224 i0 99.73 99.9108108108108 370 1 100 0 1 370 720 351 Aphanomyces stellatus strain GF 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 36967 684 0.991228070175439 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
10141865 10141865 PRJNA784298_P_NODE_25868_length_244_cov_0.900585_g25667_i0 PRJNA784298 25868 244 0.900585 2.1974274 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 335 1.9499999999999992e-87   NTclustered gi|1770647996|gb|MK941864.1| 101203 g25667 i0 91.393 85.0901639344262 244 21 100 0 1 244 33 276 Saprolegnia parasitica isolate S2 cytochrome c oxidase subunit II (Cox2) gene, partial cds; mitochondrial blastn 20762 335 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
12244856 12244856 PRJNA784298_P_NODE_14390_length_328_cov_3.890196_g14189_i0 PRJNA784298 14390 328 3.890196 12.75984288 Wilsoniana portulacae 572137 SAR_Eukaryotes SAR_Eukaryotes 606 5.249999999999998e-169   NTclustered gi|210164195|gb|EU826120.1| 572137 g14189 i0 100 18.7560975609756 328 0 100 0 1 328 344 671 Wilsoniana portulacae strain HUH 640 large subunit ribosomal RNA gene, partial sequence blastn 6152 606 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Wilsoniana Wilsoniana portulacae
12245079 12245079 PRJNA784298_P_NODE_910_length_1362_cov_10.416602_g798_i0 PRJNA784298 910 1362 10.416602 141.87411924 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 2169 0   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g798 i0 95.401 107.412628487518 1370 49 100 14 1 1362 3075 1712 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 146296 2169 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
13519255 13519255 PRJNA784298_P_NODE_6391_length_501_cov_2.593458_g6191_i0 PRJNA784298 6391 501 2.593458 12.99322458 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 926 0   NTclustered gi|1186441155|gb|KY989960.1| 1982524 g6191 i0 100 99.3872255489022 501 0 100 0 1 501 211 711 Aphanomyces sp. isolate CNUaq small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 49793 926 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.
16516189 16516189 PRJNA784298_P_NODE_25953_length_243_cov_22.511765_g25752_i0 PRJNA784298 25953 243 22.511765 54.70358895 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 429 8.66e-116   NTclustered gi|166048041|emb|CU364162.1| 100861 g25752 i0 99.16 88.6954732510288 238 2 98 0 1 238 402 165 Aphanomyces euteiches cDNA blastn 21553 433 0.990762124711316 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
18616943 18616943 PRJNA784298_P_NODE_24615_length_248_cov_0.880000_g24414_i0 PRJNA784298 24615 248 0.88 2.1824 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 459 1.13e-124   NTclustered gi|166046598|emb|CU367715.1| 100861 g24414 i0 100 99.7620967741936 248 0 100 0 1 248 126 373 Aphanomyces euteiches cDNA blastn 24741 459 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
19892216 19892216 PRJNA784298_P_NODE_25496_length_245_cov_0.895349_g25295_i0 PRJNA784298 25496 245 0.895349 2.19360505 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 370 5.38e-98   NTclustered gi|673039884|ref|XM_008875681.1| 157072 g25295 i0 93.878 47.269387755102 245 15 100 0 1 245 266 510 Aphanomyces invadans 60S ribosomal protein mRNA blastn 11581 370 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;