RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA784298", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA784298 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6317282 6317282 PRJNA784298_P_NODE_28165_length_223_cov_19.600000_g27964_i0 PRJNA784298 28165 223 19.6 43.708 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 93.5 1.17e-14   NTclustered gi|220983376|dbj|AB453012.1| 552662 g27964 i0 93.651 3.87443946188341 63 3 28 1 2 63 3610 3548 Cercozoa sp. YPF501 gene for nuclear large subunit ribosomal RNA, partial sequence blastn 864 93.5 1 Eukaryota Sar   Cercozoa         Cercozoa sp. YPF501
17343647 17343647 PRJNA784298_P_NODE_27694_length_231_cov_2.202532_g27493_i0 PRJNA784298 27694 231 2.202532 5.08784892 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 422 1.37e-113   NTclustered gi|238617602|gb|FJ973377.1| 188950 g27493 i0 99.567 92.7792207792208 231 1 100 0 1 231 1867 2097 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 21432 422 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
19892064 19892064 PRJNA784298_P_NODE_11296_length_372_cov_5.735786_g11095_i0 PRJNA784298 11296 372 5.735786 21.33712392 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 688 0   NTclustered gi|238617602|gb|FJ973377.1| 188950 g11095 i0 100 1 372 0 100 0 1 372 401 772 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 372 688 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;