RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA784298", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA784298 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29358972 29358972 PRJNA784298_P_NODE_8049_length_444_cov_1.681941_g7848_i0 PRJNA784298 8049 444 1.681941 7.46781804 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 107 9.77e-26   NR HEY6436001.1 2651163 g7848 i0 51.3 0.790540540540541 117 55 78.4 2 349 2 27 142 HEY6436001.1 hypothetical protein [Ignavibacteriaceae bacterium] diamond 351 107 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
29642725 29642725 PRJNA784298_P_NODE_27350_length_235_cov_2.753086_g27149_i0 PRJNA784298 27350 235 2.753086 6.4697521 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 128 5.5800000000000005e-33   NR MCI0708478.1 2026749 g27149 i0 75.6 5.97446808510638 78 19 99.6 0 1 234 15 92 MCI0708478.1 glutamate--tRNA ligase [Ignavibacteriota bacterium] diamond 1404 128 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
29999887 29999887 PRJNA784298_P_NODE_14571_length_326_cov_2.656126_g14370_i0 PRJNA784298 14571 326 2.656126 8.65897076 Pseudomonadati 3379134 Bacteria Bacteria 107 4.37e-27   NR MBD1209821.1 2053306 g14370 i0 53.8 8.69631901840491 91 41 83.7 1 53 325 2 91 MBD1209821.1 helix-turn-helix transcriptional regulator [Ignavibacteria bacterium] diamond 2835 107 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;