RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA784298", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Colwelliibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Colwelliibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA784298 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30811882 30811882 PRJNA784298_P_NODE_21334_length_266_cov_2.041451_g21133_i0 PRJNA784298 21334 266 2.041451 5.43025966 Candidatus Colwellbacteria bacterium CG1 2750074 Bacteria Bacteria 82.8 1.18e-17   NR PIR98028.1 1974540 g21133 i0 55.4 2.36842105263158 65 23 66.5 1 38 214 57 121 PIR98028.1 MAG: hypothetical protein COT89_01580 [Candidatus Colwellbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_42_22] diamond 630 82.8 1 Bacteria Bacteria candidate phyla   Candidatus Colwelliibacteriota         Candidatus Colwellbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_42_22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;