RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA784298", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA784298 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3316531 3316531 PRJNA784298_P_NODE_14063_length_332_cov_14.525097_g13862_i0 PRJNA784298 14063 332 14.525097 48.22332204 Karpovia croatica 2925417 Root_unresolved Root_unresolved 102 3.06e-17   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g13862 i0 87.64 18.3765060240964 89 9 27 2 240 327 6020 6107 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6101 102 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
31548523 31548523 PRJNA784298_P_NODE_19916_length_277_cov_0.911765_g19715_i0 PRJNA784298 19916 277 0.911765 2.52558905 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 131 1.02e-34   NR XP_013760592.1 461836 g19715 i0 71.4 3.89891696750903 91 24 96.4 1 268 2 43 133 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 1080 132 0.992424242424242 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;