RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA784298" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA784298 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3316762 3316762 PRJNA784298_P_NODE_9503_length_408_cov_2.573134_g9302_i0 PRJNA784298 9503 408 2.573134 10.49838672 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 726 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g9302 i0 98.775 39.5588235294118 408 5 100 0 1 408 2896 2489 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16140 726 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18616849 18616849 PRJNA784298_P_NODE_15855_length_312_cov_1.644351_g15654_i0 PRJNA784298 15855 312 1.644351 5.13037512 Cavenderia fasciculata 261658 Evosea other_Eukaryota 202 2.7399999999999997e-47   NTclustered gi|470261707|ref|XM_004360422.1| 261658 g15654 i0 79.31 45.1089743589744 290 58 93 2 24 312 467 179 Cavenderia fasciculata S-adenosylmethionine synthetase (metK), partial mRNA blastn 14074 202 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
18616921 18616921 PRJNA784298_P_NODE_23215_length_253_cov_5.700000_g23014_i0 PRJNA784298 23215 253 5.7 14.421 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 459 1.1599999999999999e-124   NTclustered gi|909719645|gb|KT185625.1| 5778 g23014 i0 99.602 2.99604743083004 251 1 99 0 3 253 6316 6066 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 758 459 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30590678 30590678 PRJNA784298_P_NODE_19913_length_277_cov_1.039216_g19712_i0 PRJNA784298 19913 277 1.039216 2.87862832 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 114 8.71e-31   NR AKT93943.1 5778 g19712 i0 67 0.985559566787004 91 30 98.6 0 275 3 8 98 AKT93943.1 ribosomal protein S14 [Vermamoeba vermiformis] diamond 273 114 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;