RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA782551", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA782551 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28380054 28380054 PRJNA782551_P_NODE_17086_length_250_cov_0.870056_g16964_i0 PRJNA782551 17086 250 0.870056 2.17514 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 162 8.719999999999999e-47   NR HJR77919.1 2026770 g16964 i0 92.8 0.996 83 6 99.6 0 1 249 195 277 HJR77919.1 zinc-binding dehydrogenase [Nitrospiraceae bacterium] diamond 249 162 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
29611155 29611155 PRJNA782551_P_NODE_17690_length_249_cov_0.875000_g17568_i0 PRJNA782551 17690 249 0.875 2.17875 Nitrospira sp. ST-bin4 1978764 Bacteria Bacteria 42.7 0.0391   NR OQW61924.1 1978764 g17568 i0 39.6 0.63855421686747 53 30 62.7 2 67 222 124 175 OQW61924.1 MAG: hypothetical protein BVN28_06105 [Nitrospira sp. ST-bin4] diamond 159 42.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. ST-bin4

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;