RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA782551", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA782551 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29011888 29011888 PRJNA782551_P_NODE_20088_length_246_cov_0.890173_g19966_i0 PRJNA782551 20088 246 0.890173 2.18982558 Polychytrium aggregatum 110093 Fungi Fungi 76.6 1.03e-14   NR XP_052967831.1 110093 g19966 i0 51.3 1.90243902439024 76 37 92.7 0 17 244 152 227 XP_052967831.1 uncharacterized protein BJ171DRAFT_499534 [Polychytrium aggregatum] diamond 468 76.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
30211404 30211404 PRJNA782551_P_NODE_25012_length_241_cov_0.916667_g24890_i0 PRJNA782551 25012 241 0.916667 2.20916747 Physocladia obscura 109957 Fungi Fungi 84.7 7.2e-18   NR KAJ3096479.1 109957 g24890 i0 54.7 1.58091286307054 64 29 79.7 0 227 36 177 240 KAJ3096479.1 hypoxanthine phosphoribosyltransferase 1 [Physocladia obscura] diamond 381 84.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Physocladia Physocladia obscura

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;