RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA782551", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA782551 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2039554 2039554 PRJNA782551_P_NODE_13762_length_265_cov_1.203125_g13640_i0 PRJNA782551 13762 265 1.203125 3.18828125 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 418 2.0699999999999994e-112   NTclustered gi|325195057|emb|FR825852.1| 890382 g13640 i0 95.113 100.166037735849 266 12 100 1 1 265 449 184 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 26544 418 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
9692049 9692049 PRJNA782551_P_NODE_16668_length_250_cov_0.870056_g16546_i0 PRJNA782551 16668 250 0.870056 2.17514 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 462 8.83e-126   NTclustered gi|166044502|emb|CU367411.1| 100861 g16546 i0 100 99.528 250 0 100 0 1 250 268 19 Aphanomyces euteiches cDNA blastn 24882 462 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;