RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA782235", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Kitrinoviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA782235 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5867019 5867019 PRJNA782235_P_NODE_9865_length_290_cov_1.419355_g9676_i0 PRJNA782235 9865 290 1.419355 4.1161295 Tobamovirus tabaci 3432891 Viruses Viruses 481 2.89e-131   NTclustered gi|1590853296|gb|MH595920.1| 12242 g9676 i0 96.552 99.9827586206897 290 10 100 0 1 290 3001 2712 Tobacco mosaic virus isolate Harbin-2, complete genome blastn 28995 481 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
23715983 23715983 PRJNA782235_P_NODE_10359_length_287_cov_1.322430_g10170_i0 PRJNA782235 10359 287 1.32243 3.7953741 Skokie tombus-like virus 2789423 Viruses Viruses 89.8 2.02e-13   NTclustered gi|1933757594|gb|MW177751.1| 2789423 g10170 i0 92.063 0.219512195121951 63 5 22 0 225 287 1269 1207 Skokie tombus-like virus strain USAdp coat protein gene, partial cds blastn 63 89.8 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   Skokie tombus-like virus
25439095 25439095 PRJNA782235_P_NODE_12280_length_275_cov_0.826733_g12091_i0 PRJNA782235 12280 275 0.826733 2.27351575 Viruses 10239 Viruses Viruses 353 6.19e-93   NTclustered gi|1935607036|gb|MT747993.1| 2789423 g12091 i0 89.818 2 275 28 100 0 1 275 1205 1479 Skokie tombus-like virus strain USAdp-1 RNA-dependent RNA polymerase gene, complete cds blastn 550 353 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   Skokie tombus-like virus
32803238 32803238 PRJNA782235_P_NODE_15720_length_253_cov_2.533333_g15531_i0 PRJNA782235 15720 253 2.533333 6.40933249 Rhizopus microsporus virga-like virus 1 3156536 Viruses Viruses 43.9 0.0172   NR BFM51661.1 3156536 g15531 i0 30 0.948616600790514 80 53 93.7 2 17 253 202 279 BFM51661.1 RNA-dependent RNA polymerase [Rhizopus microsporus virga-like virus 1] diamond 240 43.9 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae   Rhizopus microsporus virga-like virus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;