RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA782235", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA782235 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27085264 27085264 PRJNA782235_P_NODE_11582_length_279_cov_1.441748_g11393_i0 PRJNA782235 11582 279 1.441748 4.02247692 Micavibrio sp. 2024841 Bacteria Bacteria 55.1 3.05e-7   NR HEU4837795.1 2024841 g11393 i0 57.4 0.655913978494624 61 25 64.5 1 183 4 1 61 HEU4837795.1 hypothetical protein [Micavibrio sp.] diamond 183 55.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
28095890 28095890 PRJNA782235_P_NODE_21465_length_247_cov_0.885057_g21276_i0 PRJNA782235 21465 247 0.885057 2.18609079 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 63.2 2.45e-9   NR MBL7688261.1 2026715 g21276 i0 37.3 1.0080971659919 83 48 98.4 2 3 245 607 687 MBL7688261.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 249 63.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
28768177 28768177 PRJNA782235_P_NODE_25327_length_243_cov_0.905882_g25138_i0 PRJNA782235 25327 243 0.905882 2.20129326 Oligoflexus 1553903 Bacteria Bacteria 73.9 1.29e-13   NR WP_218109877.1 708132 g25138 i0 56.4 1.33333333333333 55 24 67.9 0 79 243 12 66 WP_218109877.1 1-acyl-sn-glycerol-3-phosphate acyltransferase [Oligoflexus tunisiensis] diamond 324 73.9 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus tunisiensis
30622181 30622181 PRJNA782235_P_NODE_19073_length_249_cov_0.875000_g18884_i0 PRJNA782235 19073 249 0.875 2.17875 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 124 9.299999999999999e-33   NR MBI2233896.1 349221 g18884 i0 70.7 1.97590361445783 82 24 98.8 0 247 2 66 147 MBI2233896.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Micavibrio aeruginosavorus] diamond 492 124 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;