RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA782235", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA782235 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27505496 27505496 PRJNA782235_P_NODE_20943_length_247_cov_0.885057_g20754_i0 PRJNA782235 20943 247 0.885057 2.18609079 Bacteria 2 Bacteria Bacteria 139 3.3300000000000003e-36   NR MBS1721774.1 2033014 g20754 i0 79.7 1.91902834008097 79 16 96 0 6 242 211 289 MBS1721774.1 enoyl-CoA hydratase/isomerase family protein [Armatimonadota bacterium] diamond 474 139 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29295693 29295693 PRJNA782235_P_NODE_10649_length_285_cov_1.448113_g10460_i0 PRJNA782235 10649 285 1.448113 4.12712205 Armatimonadota bacterium 2033014 Bacteria Bacteria 111 5.08e-26   NR MBI3911741.1 2033014 g10460 i0 88.1 0.705263157894737 67 8 70.5 0 202 2 493 559 MBI3911741.1 efflux RND transporter periplasmic adaptor subunit [Armatimonadota bacterium] diamond 201 111 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30275054 30275054 PRJNA782235_P_NODE_24432_length_244_cov_0.900585_g24243_i0 PRJNA782235 24432 244 0.900585 2.1974274 Armatimonadota bacterium 2033014 Bacteria Bacteria 45.4 0.00397   NR MBI3912378.1 2033014 g24243 i0 39.4 1.6844262295082 71 40 87.3 2 18 230 129 196 MBI3912378.1 hypothetical protein [Armatimonadota bacterium] diamond 411 45.4 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;