RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA782235", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 8 ✖

bioproject 1

  • PRJNA782235 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7142044 7142044 PRJNA782235_P_NODE_8726_length_307_cov_0.987179_g8537_i0 PRJNA782235 8726 307 0.987179 3.03063953 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 396 1.15e-105   NTclustered gi|2874253952|emb|OY970277.1| 412056 g8537 i0 91.93 202.954397394137 285 20 92 3 8 290 2750194 2750477 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 62307 396 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
27211426 27211426 PRJNA782235_P_NODE_11762_length_278_cov_1.331707_g11573_i0 PRJNA782235 11762 278 1.331707 3.70214546 Prosthecobacter debontii 48467 Bacteria Bacteria 76.6 5.68e-14   NR WP_078815981.1 48467 g11573 i0 44.6 2.97841726618705 92 51 99.3 0 278 3 152 243 WP_078815981.1 PfkB family carbohydrate kinase [Prosthecobacter debontii] diamond 828 76.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter debontii
28727413 28727413 PRJNA782235_P_NODE_21967_length_246_cov_0.890173_g21778_i0 PRJNA782235 21967 246 0.890173 2.18982558 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.7 0.0344   NR MBN8459160.1 2026799 g21778 i0 28.2 0.865853658536585 71 47 85.4 2 36 245 173 240 MBN8459160.1 CAAX prenyl protease-related protein [Verrucomicrobiota bacterium] diamond 213 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29327186 29327186 PRJNA782235_P_NODE_24269_length_244_cov_0.900585_g24080_i0 PRJNA782235 24269 244 0.900585 2.1974274 Luteolibacter sp. 1962973 Bacteria Bacteria 110 7.79e-29   NR WP_348217506.1 1962973 g24080 i0 67.5 0.983606557377049 80 26 98.4 0 243 4 56 135 WP_348217506.1 DUF6157 family protein [Luteolibacter sp.] diamond 240 110 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
29927404 29927404 PRJNA782235_P_NODE_28531_length_241_cov_0.898810_g28342_i0 PRJNA782235 28531 241 0.89881 2.1661321 Rubellicoccus peritrichatus 3080537 Bacteria Bacteria 145 1.94e-41   NR WP_317834364.1 3080537 g28342 i0 85.7 0.95850622406639 77 11 95.9 0 236 6 166 242 WP_317834364.1 response regulator transcription factor [Rubellicoccus peritrichatus] diamond 231 145 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Cerasicoccaceae Rubellicoccus Rubellicoccus peritrichatus
30780278 30780278 PRJNA782235_P_NODE_22334_length_246_cov_0.890173_g22145_i0 PRJNA782235 22334 246 0.890173 2.18982558 Rubellicoccus peritrichatus 3080537 Bacteria Bacteria 132 5.91e-35   NR WP_317832957.1 3080537 g22145 i0 80.2 0.98780487804878 81 16 98.8 0 2 244 100 180 WP_317832957.1 peptidase [Rubellicoccus peritrichatus] diamond 243 132 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Cerasicoccaceae Rubellicoccus Rubellicoccus peritrichatus
31855180 31855180 PRJNA782235_P_NODE_23117_length_245_cov_0.895349_g22928_i0 PRJNA782235 23117 245 0.895349 2.19360505 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 71.6 7.14e-13   NR HTJ73245.1 2499141 g22928 i0 45.7 0.991836734693878 81 42 99.2 2 2 244 54 132 HTJ73245.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 243 71.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32076754 32076754 PRJNA782235_P_NODE_26178_length_243_cov_0.905882_g25989_i0 PRJNA782235 26178 243 0.905882 2.20129326 Rubritalea halochordaticola 714537 Bacteria Bacteria 43.1 0.0105   NR WP_346190057.1 714537 g25989 i0 56.7 0.703703703703704 30 13 37 0 90 1 1 30 WP_346190057.1 DUF2750 domain-containing protein [Rubritalea halochordaticola] diamond 171 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Rubritaleaceae Rubritalea Rubritalea halochordaticola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;