RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA782235", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA782235 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19063961 19063961 PRJNA782235_P_NODE_15455_length_255_cov_1.692308_g15266_i0 PRJNA782235 15455 255 1.692308 4.3153854 root 1 Root_unresolved Root_unresolved 54.7 0.006   NTclustered gi|2912998575|dbj|AP039604.1| 145626 g15266 i0 100 0.796078431372549 29 0 11 0 56 84 18566728 18566700 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 23, sequence blastn 203 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
28443396 28443396 PRJNA782235_P_NODE_12706_length_272_cov_1.547739_g12517_i0 PRJNA782235 12706 272 1.547739 4.20985008 Plakobranchus ocellatus 259542 Mollusca Mollusca 45.4 0.0042   NR GFN81058.1 259542 g12517 i0 45.2 4.11397058823529 42 22 45.2 1 1 123 156 197 GFN81058.1 ribonuclease hi [Plakobranchus ocellatus] diamond 1119 45.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Plakobranchidae Plakobranchus Plakobranchus ocellatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;