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contig_metadata

36 rows where bioproject = "PRJNA781453" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 36 ✖

bioproject 1

  • PRJNA781453 · 36 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
762813 762813 PRJNA781453_P_NODE_33141_length_250_cov_0.870056_g33026_i0 PRJNA781453 33141 250 0.870056 2.17514 Caudoviricetes sp. 2832643 Viruses Viruses 153 5.75e-41   NR DAY73630.1 2832643 g33026 i0 89 1.968 82 9 98.4 0 250 5 138 219 DAY73630.1 MAG TPA: DNA polymerase [Caudoviricetes sp.] diamond 492 153 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
1212188 1212188 PRJNA781453_P_NODE_28781_length_268_cov_1.497436_g28666_i0 PRJNA781453 28781 268 1.497436 4.01312848 Carlavirus 12163 Viruses Viruses 468 2.06e-127   NTclustered gi|1081700958|gb|KU896946.1| 12169 g28666 i0 98.134 35.1865671641791 268 5 100 0 1 268 1871 1604 Potato virus S isolate HB7, complete genome blastn 9430 468 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
2038562 2038562 PRJNA781453_P_NODE_25602_length_287_cov_1.074766_g25487_i0 PRJNA781453 25602 287 1.074766 3.08457842 Caudoviricetes sp. 2832643 Viruses Viruses 531 2.799999999999999e-146   NTclustered gi|2054472816|tpg|BK031770.1| 2832643 g25487 i0 100 1.97212543554007 287 0 100 0 1 287 10162 10448 MAG TPA_asm: Caudoviricetes sp. isolate ctpsk1, partial genome blastn 566 531 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
2038915 2038915 PRJNA781453_P_NODE_37922_length_244_cov_0.900585_g37807_i0 PRJNA781453 37922 244 0.900585 2.1974274 Caudoviricetes sp. 2832643 Viruses Viruses 442 1.1199999999999994e-119   NTclustered gi|2054539178|tpg|BK047823.1| 2832643 g37807 i0 99.587 2.97540983606557 242 1 99 0 3 244 34124 34365 MAG TPA_asm: Caudoviricetes sp. isolate ctIhz3, partial genome blastn 726 442 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
4590387 4590387 PRJNA781453_P_NODE_11184_length_445_cov_1.666667_g11070_i0 PRJNA781453 11184 445 1.666667 7.41666815 Bacteriophage sp. 38018 Viruses Viruses 817 0   NTclustered gi|2059912809|tpg|BK041510.1| 38018 g11070 i0 99.775 35.5505617977528 445 1 100 0 1 445 37605 37161 MAG TPA_asm: Bacteriophage sp. isolate cthoT2, partial genome blastn 15820 817 1 Viruses               Bacteriophage sp.
4591260 4591260 PRJNA781453_P_NODE_39764_length_242_cov_0.911243_g39649_i0 PRJNA781453 39764 242 0.911243 2.20520806 Caudoviricetes sp. 2832643 Viruses Viruses 183 7.41e-42   NTclustered gi|2056746445|tpg|BK045213.1| 2832643 g39649 i0 86.667 0.681818181818182 165 22 68 0 1 165 14650 14486 MAG TPA_asm: Caudoviricetes sp. isolate ctlIw2, partial genome blastn 165 183 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
7141040 7141040 PRJNA781453_P_NODE_24946_length_291_cov_1.224771_g24831_i0 PRJNA781453 24946 291 1.224771 3.56408361 Carlavirus sigmasolani 3427796 Viruses Viruses 488 1.7299999999999995e-133   NTclustered gi|1825505916|gb|MT107560.1| 12169 g24831 i0 96.907 99.7731958762887 291 9 100 0 1 291 6781 7071 Potato virus S isolate X1-SD, complete genome blastn 29034 488 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
7141584 7141584 PRJNA781453_P_NODE_6486_length_588_cov_1.943689_g6376_i0 PRJNA781453 6486 588 1.943689 11.42889132 brine shrimp yue-like virus 3 2900455 Viruses Viruses 1086 0   NTclustered gi|2209095232|gb|OL472818.1| 2900455 g6376 i0 100 4.98639455782313 588 0 100 0 1 588 4476 3889 MAG: Brine shrimp yue-like virus 3 isolate SH/98 segment 1 RNA-dependent RNA polymerase gene, complete cds blastn 2932 1086 1 Viruses   Orthornavirae Negarnaviricota Yunchangviricetes Goujianvirales Yueviridae   brine shrimp yue-like virus 3
8416048 8416048 PRJNA781453_P_NODE_40007_length_242_cov_0.911243_g39892_i0 PRJNA781453 40007 242 0.911243 2.20520806 Caudoviricetes sp. 2832643 Viruses Viruses 418 1.8699999999999998e-112   NTclustered gi|2053106382|tpg|BK020608.1| 2832643 g39892 i0 98.319 7.94628099173554 238 4 98 0 1 238 5981 6218 MAG TPA_asm: Caudoviricetes sp. isolate ctoTG1, partial genome blastn 1923 418 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
9691279 9691279 PRJNA781453_P_NODE_35808_length_247_cov_0.885057_g35693_i0 PRJNA781453 35808 247 0.885057 2.18609079 Caudoviricetes sp. 2832643 Viruses Viruses 446 8.759999999999998e-121   NTclustered gi|2059705518|tpg|BK029657.1| 2832643 g35693 i0 99.19 25.4898785425101 247 2 100 0 1 247 50777 50531 MAG TPA_asm: Caudoviricetes sp. isolate ctA2R1, partial genome blastn 6296 446 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
9691392 9691392 PRJNA781453_P_NODE_40368_length_241_cov_0.916667_g40253_i0 PRJNA781453 40368 241 0.916667 2.20916747 Caudoviricetes sp. 2832643 Viruses Viruses 200 7.319999999999998e-47   NTclustered gi|2054474373|tpg|BK031805.1| 2832643 g40253 i0 96.694 0.50207468879668 121 3 50 1 1 121 702 821 MAG TPA_asm: Caudoviricetes sp. isolate ct7OL11, partial genome blastn 121 200 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
10966597 10966597 PRJNA781453_P_NODE_22309_length_309_cov_1.305085_g22194_i0 PRJNA781453 22309 309 1.305085 4.03271265 Avian carcinoma virus 11958 Viruses Viruses 555 1.7999999999999994e-153   NTclustered gi|209658|gb|M25158.1|AC2TKSEA 11958 g22194 i0 99.029 99.7928802588997 309 3 100 0 1 309 1704 1396 Avian retrovirus proviral tyrosine kinase (ENV-SEA oncogene), 3' end blastn 30836 555 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian carcinoma virus
10966852 10966852 PRJNA781453_P_NODE_31029_length_256_cov_1.016393_g30914_i0 PRJNA781453 31029 256 1.016393 2.60196608 Potyvirus rapae 3240607 Viruses Viruses 457 4.22e-124   NTclustered gi|2019445938|dbj|LC537503.1| 12230 g30914 i0 98.828 100 256 3 100 0 1 256 8845 9100 Turnip mosaic virus CHN244 RNA, nearly complete sequence blastn 25600 457 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus rapae
12691914 12691914 PRJNA781453_P_NODE_38750_length_243_cov_0.905882_g38635_i0 PRJNA781453 38750 243 0.905882 2.20129326 Carlavirus 12163 Viruses Viruses 427 3.11e-115   NTclustered gi|1746543057|gb|MN095414.1| 12169 g38635 i0 98.354 97.7942386831276 243 4 100 0 1 243 4992 5234 Potato virus S isolate KZ.Ushkonyr, complete genome blastn 23764 427 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
13516061 13516061 PRJNA781453_P_NODE_15851_length_368_cov_1.037288_g15737_i0 PRJNA781453 15851 368 1.037288 3.81721984 Potyvirus rapae 3240607 Viruses Viruses 667 0   NTclustered gi|2019445986|dbj|LC537527.1| 12230 g15737 i0 99.455 99.7255434782609 367 2 99 0 2 368 7384 7750 Turnip mosaic virus CHZH34A RNA, nearly complete sequence blastn 36699 667 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus rapae
14791446 14791446 PRJNA781453_P_NODE_35132_length_248_cov_0.862857_g35017_i0 PRJNA781453 35132 248 0.862857 2.13988536 Potyvirus rapae 3240607 Viruses Viruses 420 5.34e-113   NTclustered gi|2019445942|dbj|LC537505.1| 12230 g35017 i0 97.177 100.008064516129 248 7 100 0 1 248 3048 2801 Turnip mosaic virus CHN254 RNA, nearly complete sequence blastn 24802 420 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus rapae
16065030 16065030 PRJNA781453_P_NODE_24933_length_291_cov_1.288991_g24818_i0 PRJNA781453 24933 291 1.288991 3.75096381 Klebsiella phage phi1_175008 3127744 Viruses Viruses 230 1.1599999999999998e-55   NTclustered gi|2864144020|gb|PQ360875.1| 3127744 g24818 i0 81.429 1.12371134020619 280 52 96 0 9 288 31198 31477 Klebsiella phage phi1_175008, complete genome blastn 327 230 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Klebsiella phage phi1_175008
16515139 16515139 PRJNA781453_P_NODE_24693_length_293_cov_1.045455_g24578_i0 PRJNA781453 24693 293 1.045455 3.06318315 root 1 Root_unresolved Root_unresolved 542 1.32e-149   NTclustered gi|829492|gb|U24467.1|HIV1U24467 11676 g24578 i0 100 121.235494880546 293 0 100 0 1 293 318 26 Human immunodeficiency virus type 1 patient 3799(9-93), clone 15 LTR, (nef), partial cds blastn 35522 542 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
18613762 18613762 PRJNA781453_P_NODE_12615_length_416_cov_1.081633_g12501_i0 PRJNA781453 12615 416 1.081633 4.49959328 Caudoviricetes sp. 2832643 Viruses Viruses 758 0   NTclustered gi|2056970301|tpg|BK023111.1| 2832643 g12501 i0 99.519 52.3100961538462 416 2 100 0 1 416 20185 20600 MAG TPA_asm: Caudoviricetes sp. isolate ctaJd5, partial genome blastn 21761 758 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
18614464 18614464 PRJNA781453_P_NODE_35655_length_247_cov_0.885057_g35540_i0 PRJNA781453 35655 247 0.885057 2.18609079 Bacteriophage sp. 38018 Viruses Viruses 457 4.05e-124   NTclustered gi|2289948408|gb|OP030861.1| 38018 g35540 i0 100 12 247 0 100 0 1 247 48601 48847 MAG: Bacteriophage sp. isolate 0975_117677, partial genome blastn 2964 457 1 Viruses               Bacteriophage sp.
19889153 19889153 PRJNA781453_P_NODE_17076_length_354_cov_1.096085_g16961_i0 PRJNA781453 17076 354 1.096085 3.8801409 Carlavirus sigmasolani 3427796 Viruses Viruses 643 4.3399999999999985e-180   NTclustered gi|1825505916|gb|MT107560.1| 12169 g16961 i0 99.435 99.4124293785311 354 2 100 0 1 354 5934 6287 Potato virus S isolate X1-SD, complete genome blastn 35192 643 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
19889382 19889382 PRJNA781453_P_NODE_24656_length_293_cov_1.227273_g24541_i0 PRJNA781453 24656 293 1.227273 3.59590989 Carlavirus sigmasolani 3427796 Viruses Viruses 536 6.149999999999998e-148   NTclustered gi|1825505916|gb|MT107560.1| 12169 g24541 i0 99.659 99.8668941979522 293 1 100 0 1 293 7943 7651 Potato virus S isolate X1-SD, complete genome blastn 29261 536 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
21614457 21614457 PRJNA781453_P_NODE_39837_length_242_cov_0.911243_g39722_i0 PRJNA781453 39837 242 0.911243 2.20520806 Viruses 10239 Viruses Viruses 442 1.1099999999999995e-119   NTclustered gi|1549118192|gb|MK250015.1| 2491281 g39722 i0 99.587 9 242 1 100 0 1 242 372038 372279 MAG: Prevotella phage Lak-A1, complete genome blastn 2178 442 1 Viruses Grandeviruses Heunggongvirae Uroviricota Caudoviricetes   Lakviridae Vetruanivirus Vetruanivirus primi
22440187 22440187 PRJNA781453_P_NODE_34678_length_248_cov_0.880000_g34563_i0 PRJNA781453 34678 248 0.88 2.1824 Caudoviricetes sp. 2832643 Viruses Viruses 420 5.34e-113   NTclustered gi|2054543371|tpg|BK047898.1| 2832643 g34563 i0 97.177 7 248 7 100 0 1 248 4099 4346 MAG TPA_asm: Caudoviricetes sp. isolate ctdDx65, partial genome blastn 1736 420 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
22440205 22440205 PRJNA781453_P_NODE_35338_length_247_cov_0.885057_g35223_i0 PRJNA781453 35338 247 0.885057 2.18609079 phage Lak_Megaphage_RVC_AP1_GC26 3109224 Viruses Viruses 435 1.9e-117   NTclustered gi|2637654041|gb|OR769218.1| 3109224 g35223 i0 98.381 7.78137651821862 247 4 100 0 1 247 381301 381055 MAG: Phage Lak_Megaphage_RVC_AP1_GC26, complete sequence blastn 1922 435 1 Viruses Caudoviricetes code 15 clade Heunggongvirae Uroviricota Caudoviricetes       phage Lak_Megaphage_RVC_AP1_GC26
22440261 22440261 PRJNA781453_P_NODE_37438_length_245_cov_0.895349_g37323_i0 PRJNA781453 37438 245 0.895349 2.19360505 Streptococcus phage vB_SbRt-pBovineS21 2961981 Viruses Viruses 108 8.15e-26   NR UVD41291.1 2961981 g37323 i0 77.8 1.55510204081633 63 13 77.1 1 243 55 319 380 UVD41291.1 major capsid protein [Streptococcus phage vB_SbRt-pBovineS21] diamond 381 108 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Rountreeviridae   Streptococcus phage vB_SbRt-pBovineS21
23715450 23715450 PRJNA781453_P_NODE_27839_length_273_cov_2.105000_g27724_i0 PRJNA781453 27839 273 2.105 5.74665 Caudoviricetes sp. 2832643 Viruses Viruses 54.7 0.007   NTclustered gi|2059623175|tpg|BK028264.1| 2832643 g27724 i0 100 0.212454212454212 29 0 11 0 13 41 44643 44615 MAG TPA_asm: Caudoviricetes sp. isolate ctYCW9, partial genome blastn 58 54.7 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
24988649 24988649 PRJNA781453_P_NODE_12760_length_413_cov_1.358824_g12646_i0 PRJNA781453 12760 413 1.358824 5.61194312 Carlavirus sigmasolani 3427796 Viruses Viruses 741 0   NTclustered gi|1002341922|gb|KU058657.1| 12169 g12646 i0 99.031 57.041162227602896 413 4 100 0 1 413 8197 7785 Potato virus S isolate NZ-A ab030 Lincoln, complete genome blastn 23558 741 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
24989344 24989344 PRJNA781453_P_NODE_36240_length_246_cov_0.890173_g36125_i0 PRJNA781453 36240 246 0.890173 2.18982558 Bacteriophage sp. 38018 Viruses Viruses 283 7.239999999999999e-72   NTclustered gi|2053043885|tpg|BK024308.1| 38018 g36125 i0 87.5 5.44308943089431 248 27 100 4 1 246 16937 17182 MAG TPA_asm: Bacteriophage sp. isolate ctrOp24, partial genome blastn 1339 283 1 Viruses               Bacteriophage sp.
27274893 27274893 PRJNA781453_P_NODE_26083_length_284_cov_1.071090_g25968_i0 PRJNA781453 26083 284 1.07109 3.0418956 Neuropteran orthomyxo-related virus OKIAV19 2792560 Viruses Viruses 61.6 1.39e-8   NR QPL15317.1 2792560 g25968 i0 41.8 0.707746478873239 67 39 70.8 0 283 83 607 673 QPL15317.1 polymerase PA [Neuropteran orthomyxo-related virus OKIAV190] diamond 201 61.6 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Neuropteran orthomyxo-related virus OKIAV190
27401367 27401367 PRJNA781453_P_NODE_16823_length_357_cov_1.021127_g16708_i0 PRJNA781453 16823 357 1.021127 3.64542339 Citrus yellow mosaic virus 174178 Viruses Viruses 117 1.28e-27   NR ACH86211.1 174178 g16708 i0 70.7 1.89915966386555 75 22 63 0 227 3 239 313 ACH86211.1 unknown [Citrus yellow mosaic virus] diamond 678 117 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus tessellocitri
28632872 28632872 PRJNA781453_P_NODE_33667_length_249_cov_0.875000_g33552_i0 PRJNA781453 33667 249 0.875 2.17875 Garrulus glandarius parvoviridae sp. 2794508 Viruses Viruses 45.8 0.00304   NR QTE03959.1 2794508 g33552 i0 50 1.1566265060241 36 18 43.4 0 138 245 149 184 QTE03959.1 MAG: nonstructural protein 1, partial [Garrulus glandarius parvoviridae sp.] diamond 288 45.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Garrulus glandarius parvoviridae sp.
29043281 29043281 PRJNA781453_P_NODE_33848_length_249_cov_0.875000_g33733_i0 PRJNA781453 33848 249 0.875 2.17875 Caudoviricetes sp. 2832643 Viruses Viruses 90.9 1.89e-19   NR DAY73598.1 2832643 g33733 i0 53.6 1.01204819277108 84 38 100 1 1 249 207 290 DAY73598.1 MAG TPA: bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase [Caudoviricetes sp.] diamond 252 90.9 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
29421801 29421801 PRJNA781453_P_NODE_20329_length_324_cov_1.227092_g20214_i0 PRJNA781453 20329 324 1.227092 3.97577808 Betapolyomavirus macacae 1891767 Viruses Viruses 53.5 1.55e-5   NR AAK29054.1 1891767 g20214 i0 78.1 0.296296296296296 32 7 29.6 0 129 34 506 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 96 53.5 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
30053444 30053444 PRJNA781453_P_NODE_13471_length_401_cov_1.353659_g13357_i0 PRJNA781453 13471 401 1.353659 5.42817259 Streptococcus phage vB_SbRt-pBovineS21 2961981 Viruses Viruses 122 1.36e-29   NR UVD41285.1 2961981 g13357 i0 59.8 1.52618453865337 102 38 74.1 1 304 8 16 117 UVD41285.1 tail fiber protein [Streptococcus phage vB_SbRt-pBovineS21] diamond 612 122 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Rountreeviridae   Streptococcus phage vB_SbRt-pBovineS21
32434376 32434376 PRJNA781453_P_NODE_29079_length_267_cov_0.840206_g28964_i0 PRJNA781453 29079 267 0.840206 2.24335002 Viruses 10239 Viruses Viruses 111 1.53e-29   NR QQV91875.1 2801835 g28964 i0 74.6 1.50561797752809 67 17 75.3 0 1 201 42 108 QQV91875.1 hypothetical protein vBKpMFBKp34_046 [Klebsiella phage vB_KpM_FBKp34] diamond 402 111 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Klebsiella phage vB_KpM_FBKp34

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;