RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA781453" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA781453 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10140785 10140785 PRJNA781453_P_NODE_32668_length_250_cov_1.305085_g32553_i0 PRJNA781453 32668 250 1.305085 3.2627125 Dalyellia 1311978 Platyhelminthes Platyhelminthes 99 2.87e-16   NTclustered gi|472441160|gb|KC529574.1| 1311979 g32553 i0 90.541 29.696 74 7 30 0 177 250 1410 1483 Dalyellia tatrica isolate UH252.7 28S ribosomal RNA gene, partial sequence blastn 7424 99 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Dalyelliidae Dalyellia Dalyellia tatrica
13516722 13516722 PRJNA781453_P_NODE_37591_length_245_cov_0.895349_g37476_i0 PRJNA781453 37591 245 0.895349 2.19360505 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 52.8 0.022   NTclustered gi|2318754866|ref|XM_051215112.1| 6185 g37476 i0 100 0.114285714285714 28 0 11 0 111 138 575 602 Schistosoma haematobium uncharacterized protein (MS3_00006867), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;