RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA781453", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Viruses · 6 ✖

tax_phylum 1

  • Kitrinoviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA781453 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1212188 1212188 PRJNA781453_P_NODE_28781_length_268_cov_1.497436_g28666_i0 PRJNA781453 28781 268 1.497436 4.01312848 Carlavirus 12163 Viruses Viruses 468 2.06e-127   NTclustered gi|1081700958|gb|KU896946.1| 12169 g28666 i0 98.134 35.1865671641791 268 5 100 0 1 268 1871 1604 Potato virus S isolate HB7, complete genome blastn 9430 468 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
7141040 7141040 PRJNA781453_P_NODE_24946_length_291_cov_1.224771_g24831_i0 PRJNA781453 24946 291 1.224771 3.56408361 Carlavirus sigmasolani 3427796 Viruses Viruses 488 1.7299999999999995e-133   NTclustered gi|1825505916|gb|MT107560.1| 12169 g24831 i0 96.907 99.7731958762887 291 9 100 0 1 291 6781 7071 Potato virus S isolate X1-SD, complete genome blastn 29034 488 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
12691914 12691914 PRJNA781453_P_NODE_38750_length_243_cov_0.905882_g38635_i0 PRJNA781453 38750 243 0.905882 2.20129326 Carlavirus 12163 Viruses Viruses 427 3.11e-115   NTclustered gi|1746543057|gb|MN095414.1| 12169 g38635 i0 98.354 97.7942386831276 243 4 100 0 1 243 4992 5234 Potato virus S isolate KZ.Ushkonyr, complete genome blastn 23764 427 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
19889153 19889153 PRJNA781453_P_NODE_17076_length_354_cov_1.096085_g16961_i0 PRJNA781453 17076 354 1.096085 3.8801409 Carlavirus sigmasolani 3427796 Viruses Viruses 643 4.3399999999999985e-180   NTclustered gi|1825505916|gb|MT107560.1| 12169 g16961 i0 99.435 99.4124293785311 354 2 100 0 1 354 5934 6287 Potato virus S isolate X1-SD, complete genome blastn 35192 643 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
19889382 19889382 PRJNA781453_P_NODE_24656_length_293_cov_1.227273_g24541_i0 PRJNA781453 24656 293 1.227273 3.59590989 Carlavirus sigmasolani 3427796 Viruses Viruses 536 6.149999999999998e-148   NTclustered gi|1825505916|gb|MT107560.1| 12169 g24541 i0 99.659 99.8668941979522 293 1 100 0 1 293 7943 7651 Potato virus S isolate X1-SD, complete genome blastn 29261 536 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani
24988649 24988649 PRJNA781453_P_NODE_12760_length_413_cov_1.358824_g12646_i0 PRJNA781453 12760 413 1.358824 5.61194312 Carlavirus sigmasolani 3427796 Viruses Viruses 741 0   NTclustered gi|1002341922|gb|KU058657.1| 12169 g12646 i0 99.031 57.041162227602896 413 4 100 0 1 413 8197 7785 Potato virus S isolate NZ-A ab030 Lincoln, complete genome blastn 23558 741 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus sigmasolani

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;