RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA781453", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA781453 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
762847 762847 PRJNA781453_P_NODE_3461_length_797_cov_1.991713_g3369_i0 PRJNA781453 3461 797 1.991713 15.87395261 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 392 2.7899999999999993e-132   NR HLL99960.1 2283092 g3369 i0 72.8 4.89711417816813 261 71 98.2 0 797 15 132 392 HLL99960.1 DUF6079 family protein [Pyrinomonadaceae bacterium] diamond 3903 392 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
26832123 26832123 PRJNA781453_P_NODE_7301_length_554_cov_1.800416_g7190_i0 PRJNA781453 7301 554 1.800416 9.97430464 Acidobacteriota bacterium 1978231 Bacteria Bacteria 211 7.93e-67   NR MBS1806632.1 1978231 g7190 i0 81.3 2.15523465703971 134 18 68.8 1 382 2 1 134 MBS1806632.1 FixH family protein [Acidobacteriota bacterium] diamond 1194 211 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28001360 28001360 PRJNA781453_P_NODE_5305_length_651_cov_1.896194_g5198_i0 PRJNA781453 5305 651 1.896194 12.34422294 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 118 1.48e-26   NR HXT28956.1 2910147 g5198 i0 60 0.506912442396313 110 40 50.7 3 78 407 12 117 HXT28956.1 DUF4082 domain-containing protein [Vicinamibacterales bacterium] diamond 330 118 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;