RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA781453", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA781453 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26990087 26990087 PRJNA781453_P_NODE_33982_length_249_cov_0.875000_g33867_i0 PRJNA781453 33982 249 0.875 2.17875 Polyangiaceae bacterium 2268199 Bacteria Bacteria 112 1.92e-29   NR MCC6555083.1 2268199 g33867 i0 63 1.90361445783133 81 29 97.6 1 2 244 47 126 MCC6555083.1 hypothetical protein [Polyangiaceae bacterium] diamond 474 112 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28538152 28538152 PRJNA781453_P_NODE_36447_length_246_cov_0.890173_g36332_i0 PRJNA781453 36447 246 0.890173 2.18982558 Polyangiaceae bacterium 2268199 Bacteria Bacteria 50.4 4.15e-5   NR HWO10669.1 2268199 g36332 i0 44.4 0.98780487804878 81 27 98.8 2 2 244 89 151 HWO10669.1 hypothetical protein [Polyangiaceae bacterium] diamond 243 50.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32235261 32235261 PRJNA781453_P_NODE_3758_length_768_cov_1.981295_g3660_i0 PRJNA781453 3758 768 1.981295 15.2163456 Polyangiaceae bacterium 2268199 Bacteria Bacteria 110 1.82e-24   NR MCU0656531.1 2268199 g3660 i0 81.3 0.25 64 12 25 0 575 766 1 64 MCU0656531.1 hypothetical protein [Polyangiaceae bacterium] diamond 192 110 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;