RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA781453", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA781453 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25439056 25439056 PRJNA781453_P_NODE_34940_length_248_cov_0.880000_g34825_i0 PRJNA781453 34940 248 0.88 2.1824 Arcobacter 28196 Bacteria Bacteria 52.8 0.022   NTclustered gi|2907625741|emb|OZ223301.1| 165434 g34825 i0 100 0.338709677419355 28 0 11 0 199 226 3063 3090 MAG: uncultured Arcobacter sp. isolate 7fb66f34-7b41-4cab-a2d2-b84adad47d9e genome assembly, chromosome: 2 blastn 84 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter uncultured Arcobacter sp.
28538154 28538154 PRJNA781453_P_NODE_41327_length_215_cov_3.154930_g41212_i0 PRJNA781453 41327 215 3.15493 6.7830995 Helicobacter pylori 210 Bacteria Bacteria 77 5.49e-17   NR GAA8838853.1 210 g41212 i0 94.6 0.516279069767442 37 2 51.6 0 6 116 7 43 GAA8838853.1 hypothetical protein Kyoto149A_5200 [Helicobacter pylori] diamond 111 77 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31507518 31507518 PRJNA781453_P_NODE_35796_length_247_cov_0.885057_g35681_i0 PRJNA781453 35796 247 0.885057 2.18609079 Campylobacter sp. 205 Bacteria Bacteria 43.1 0.0273   NR WP_291860728.1 205 g35681 i0 37.3 0.619433198380567 51 32 61.9 0 157 5 15 65 WP_291860728.1 glycosyltransferase family 8 protein, partial [Campylobacter sp.] diamond 153 43.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;