RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA781453" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA781453 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10966597 10966597 PRJNA781453_P_NODE_22309_length_309_cov_1.305085_g22194_i0 PRJNA781453 22309 309 1.305085 4.03271265 Avian carcinoma virus 11958 Viruses Viruses 555 1.7999999999999994e-153   NTclustered gi|209658|gb|M25158.1|AC2TKSEA 11958 g22194 i0 99.029 99.7928802588997 309 3 100 0 1 309 1704 1396 Avian retrovirus proviral tyrosine kinase (ENV-SEA oncogene), 3' end blastn 30836 555 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian carcinoma virus
16515139 16515139 PRJNA781453_P_NODE_24693_length_293_cov_1.045455_g24578_i0 PRJNA781453 24693 293 1.045455 3.06318315 root 1 Root_unresolved Root_unresolved 542 1.32e-149   NTclustered gi|829492|gb|U24467.1|HIV1U24467 11676 g24578 i0 100 121.235494880546 293 0 100 0 1 293 318 26 Human immunodeficiency virus type 1 patient 3799(9-93), clone 15 LTR, (nef), partial cds blastn 35522 542 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
27401367 27401367 PRJNA781453_P_NODE_16823_length_357_cov_1.021127_g16708_i0 PRJNA781453 16823 357 1.021127 3.64542339 Citrus yellow mosaic virus 174178 Viruses Viruses 117 1.28e-27   NR ACH86211.1 174178 g16708 i0 70.7 1.89915966386555 75 22 63 0 227 3 239 313 ACH86211.1 unknown [Citrus yellow mosaic virus] diamond 678 117 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus tessellocitri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;