RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA781453" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA781453 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7140938 7140938 PRJNA781453_P_NODE_21126_length_318_cov_1.257143_g21011_i0 PRJNA781453 21126 318 1.257143 3.99771474 Fusobacterium polymorphum 76857 Bacteria Bacteria 588 1.84e-163   NTclustered gi|2704953152|gb|CP056008.1| 76857 g21011 i0 100 13.0817610062893 318 0 100 0 1 318 11155 10838 Fusobacterium polymorphum strain SB013 plasmid pSB013A, complete sequence blastn 4160 588 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
11416171 11416171 PRJNA781453_P_NODE_7649_length_541_cov_1.316239_g7537_i0 PRJNA781453 7649 541 1.316239 7.12085299 Fusobacterium 848 Bacteria Bacteria 867 0   NTclustered gi|958162200|gb|CP013331.1| 1307442 g7537 i0 95.572 100.22550831793 542 23 100 1 1 541 477311 476770 Fusobacterium hwasookii ChDC F174, complete genome blastn 54222 872 0.994266055045872 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii
17340518 17340518 PRJNA781453_P_NODE_17034_length_354_cov_1.644128_g16919_i0 PRJNA781453 17034 354 1.644128 5.82021312 Fusobacterium periodonticum 860 Bacteria Bacteria 632 9.399999999999998e-177   NTclustered gi|1370537877|gb|CP028108.1| 860 g16919 i0 98.87 8.88700564971751 354 4 100 0 1 354 2309588 2309941 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 3146 632 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
32393170 32393170 PRJNA781453_P_NODE_27879_length_273_cov_1.540000_g27764_i0 PRJNA781453 27879 273 1.54 4.2042 Fusobacterium sp. 68766 Bacteria Bacteria 46.2 0.00191   NR WP_300361722.1 68766 g27764 i0 40 1.62637362637363 55 33 60.4 0 1 165 53 107 WP_300361722.1 3'-5' exonuclease [Fusobacterium sp.] diamond 444 46.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;