RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA781453" and tax_clade = "Sar"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA781453 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3314249 3314249 PRJNA781453_P_NODE_39603_length_242_cov_0.911243_g39488_i0 PRJNA781453 39603 242 0.911243 2.20520806 Plasmodium inui 52288 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|672187968|ref|XM_008816482.1| 1237626 g39488 i0 96.875 0.504132231404959 32 1 13 0 42 73 3124 3093 Plasmodium inui San Antonio 1 hypothetical protein partial mRNA blastn 122 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium inui
19889916 19889916 PRJNA781453_P_NODE_6856_length_572_cov_3.112224_g6745_i0 PRJNA781453 6856 572 3.112224 17.80192128 Diplophrys sp. ATCC_50360 138669 SAR_Eukaryotes SAR_Eukaryotes 741 0   NTclustered gi|10732805|gb|AF304465.1|AF304465 138669 g6745 i0 90 34.5664335664336 590 35 100 17 1 572 761 1344 Diplophrys sp. ATCC_50360 small subunit ribosomal RNA gene, complete sequence blastn 19772 741 1 Eukaryota Sar     Bigyra Amphitremida   Diplophrys Diplophrys sp. ATCC_50360
32171846 32171846 PRJNA781453_P_NODE_27858_length_273_cov_1.650000_g27743_i0 PRJNA781453 27858 273 1.65 4.5045 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 42 0.0334   NR KAI2513016.1 210448 g27743 i0 55.2 0.318681318681319 29 13 31.9 0 152 238 31 59 KAI2513016.1 hypothetical protein MHU86_1307 [Fragilaria crotonensis] diamond 87 42 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;