RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA781453", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 1 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 1 ✖

bioproject 1

  • PRJNA781453 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25439037 25439037 PRJNA781453_P_NODE_2580_length_903_cov_2.187952_g2496_i0 PRJNA781453 2580 903 2.187952 19.75720656 Lentisphaeria bacterium 2053569 Bacteria Bacteria 235 1.47e-71   NR MBR1967476.1 2053569 g2496 i0 82.2 1.34551495016611 135 24 44.9 0 406 2 1 135 MBR1967476.1 DegT/DnrJ/EryC1/StrS family aminotransferase [Lentisphaeria bacterium] diamond 1215 235 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;