contig_metadata
10 rows where bioproject = "PRJNA781453" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9691491 | 9691491 | PRJNA781453_P_NODE_6728_length_578_cov_1.524752_g6618_i0 | PRJNA781453 | 6728 | 578 | 1.524752 | 8.81306656 | Gemmataceae bacterium | 2052164 | Bacteria | Bacteria | 290 | 1.03e-93 | NR | HJZ53572.1 | 2052164 | g6618 | i0 | 75 | 1.97231833910035 | 192 | 48 | 99.7 | 0 | 1 | 576 | 82 | 273 | HJZ53572.1 trypsin-like peptidase domain-containing protein [Gemmataceae bacterium] | diamond | 1140 | 290 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Gemmataceae bacterium | ||
| 10966954 | 10966954 | PRJNA781453_P_NODE_35129_length_248_cov_0.862857_g35014_i0 | PRJNA781453 | 35129 | 248 | 0.862857 | 2.13988536 | Bacteria | 2 | Bacteria | Bacteria | 139 | 7.46e-38 | NR | MCE9607766.1 | 2052181 | g35014 | i0 | 80.5 | 3.96774193548387 | 82 | 16 | 99.2 | 0 | 2 | 247 | 81 | 162 | MCE9607766.1 sulfate ABC transporter substrate-binding protein [Planctomycetia bacterium] | diamond | 984 | 139 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetia bacterium | ||||
| 10967150 | 10967150 | PRJNA781453_P_NODE_5489_length_641_cov_1.806338_g5382_i0 | PRJNA781453 | 5489 | 641 | 1.806338 | 11.57862658 | Gemmataceae bacterium | 2052164 | Bacteria | Bacteria | 360 | 1.1599999999999995e-119 | NR | MEO2088887.1 | 2052164 | g5382 | i0 | 85.4 | 1.99375975039002 | 213 | 31 | 99.7 | 0 | 639 | 1 | 298 | 510 | MEO2088887.1 GTP-binding protein [Gemmataceae bacterium] | diamond | 1278 | 360 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Gemmataceae bacterium | ||
| 22440495 | 22440495 | PRJNA781453_P_NODE_9078_length_497_cov_1.287736_g8964_i0 | PRJNA781453 | 9078 | 497 | 1.287736 | 6.40004792 | Planctomyces sp. SH-PL62 | 1636152 | Bacteria | Bacteria | 322 | 3.35e-83 | NTclustered | gi|1015454008|gb|CP011273.1| | 1636152 | g8964 | i0 | 85.855 | 1.27766599597586 | 304 | 41 | 61 | 2 | 184 | 486 | 289158 | 288856 | Planctomyces sp. SH-PL62, complete genome | blastn | 635 | 322 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | Planctomyces | Planctomyces sp. SH-PL62 | |
| 24989381 | 24989381 | PRJNA781453_P_NODE_37560_length_245_cov_0.895349_g37445_i0 | PRJNA781453 | 37560 | 245 | 0.895349 | 2.19360505 | Gemmataceae bacterium | 2052164 | Bacteria | Bacteria | 83.2 | 2.23e-16 | NR | MFO0842695.1 | 2052164 | g37445 | i0 | 58.6 | 1.06530612244898 | 87 | 30 | 99.2 | 3 | 243 | 1 | 7 | 93 | MFO0842695.1 tetratricopeptide repeat protein [Gemmataceae bacterium] | diamond | 261 | 83.2 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Gemmataceae bacterium | ||
| 25439037 | 25439037 | PRJNA781453_P_NODE_2580_length_903_cov_2.187952_g2496_i0 | PRJNA781453 | 2580 | 903 | 2.187952 | 19.75720656 | Lentisphaeria bacterium | 2053569 | Bacteria | Bacteria | 235 | 1.47e-71 | NR | MBR1967476.1 | 2053569 | g2496 | i0 | 82.2 | 1.34551495016611 | 135 | 24 | 44.9 | 0 | 406 | 2 | 1 | 135 | MBR1967476.1 DegT/DnrJ/EryC1/StrS family aminotransferase [Lentisphaeria bacterium] | diamond | 1215 | 235 | 1 | Bacteria | PVC group | Pseudomonadati | Lentisphaerota | Lentisphaeria | Lentisphaeria bacterium | ||||
| 26809824 | 26809824 | PRJNA781453_P_NODE_37001_length_245_cov_1.058140_g36886_i0 | PRJNA781453 | 37001 | 245 | 1.05814 | 2.592443 | Bacteria | 2 | Bacteria | Bacteria | 43.1 | 0.0286 | NR | MEO7413797.1 | 2006848 | g36886 | i0 | 52.9 | 0.857142857142857 | 34 | 16 | 41.6 | 0 | 44 | 145 | 474 | 507 | MEO7413797.1 DEAD/DEAH box helicase [Opitutaceae bacterium] | diamond | 210 | 43.1 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutaceae bacterium | ||
| 29201140 | 29201140 | PRJNA781453_P_NODE_28649_length_269_cov_1.178571_g28534_i0 | PRJNA781453 | 28649 | 269 | 1.178571 | 3.17035599 | Isosphaeraceae bacterium | 2691532 | Bacteria | Bacteria | 132 | 3.36e-38 | NR | HEX8201424.1 | 2691532 | g28534 | i0 | 93.8 | 0.724907063197026 | 65 | 4 | 72.5 | 0 | 73 | 267 | 1 | 65 | HEX8201424.1 30S ribosomal protein S19 [Isosphaeraceae bacterium] | diamond | 195 | 132 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Isosphaeraceae bacterium | ||
| 30527471 | 30527471 | PRJNA781453_P_NODE_36293_length_246_cov_0.890173_g36178_i0 | PRJNA781453 | 36293 | 246 | 0.890173 | 2.18982558 | Pirellulaceae bacterium | 2699754 | Bacteria | Bacteria | 135 | 6.919999999999998e-35 | NR | MCC6509679.1 | 2699754 | g36178 | i0 | 76.8 | 1 | 82 | 19 | 100 | 0 | 246 | 1 | 103 | 184 | MCC6509679.1 cyclic nucleotide-binding domain-containing protein [Pirellulaceae bacterium] | diamond | 246 | 135 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Pirellulaceae | Pirellulaceae bacterium | ||
| 32834734 | 32834734 | PRJNA781453_P_NODE_37060_length_245_cov_0.895349_g36945_i0 | PRJNA781453 | 37060 | 245 | 0.895349 | 2.19360505 | Candidatus Scalindua sediminis | 2798304 | Bacteria | Bacteria | 43.1 | 0.0269 | NR | MBO1223062.1 | 2798304 | g36945 | i0 | 37.7 | 0.942857142857143 | 77 | 43 | 88.2 | 2 | 228 | 13 | 272 | 348 | MBO1223062.1 radical SAM protein [Candidatus Scalindua sediminis] | diamond | 231 | 43.1 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Candidatus Brocadiia | Candidatus Brocadiales | Candidatus Scalinduaceae | Candidatus Scalindua | Candidatus Scalindua sediminis |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;