RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA781427" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA781427 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4589437 4589437 PRJNA781427_P_NODE_60144_length_287_cov_1.032710_g59260_i0 PRJNA781427 60144 287 1.03271 2.9638777 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 525 1.2999999999999995e-144   NTclustered gi|387935972|gb|JN106050.1| 37360 g59260 i0 99.652 2.01742160278746 287 1 100 0 1 287 26 312 Plasmodiophora brassicae benzoic acid/salicylic acid methyltransferase (BSMT) mRNA, complete cds blastn 579 525 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
17339947 17339947 PRJNA781427_P_NODE_83894_length_247_cov_0.885057_g83010_i0 PRJNA781427 83894 247 0.885057 2.18609079 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 162 2.93e-49   NR CEO99768.1 37360 g83010 i0 100 0.995951417004049 82 0 99.6 0 246 1 83 164 CEO99768.1 hypothetical protein PBRA_007502 [Plasmodiophora brassicae] diamond 246 162 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32266785 32266785 PRJNA781427_P_NODE_85138_length_246_cov_0.890173_g84254_i0 PRJNA781427 85138 246 0.890173 2.18982558 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 169 8.32e-50   NR CEO98828.1 37360 g84254 i0 100 0.98780487804878 81 0 98.8 0 244 2 75 155 CEO98828.1 hypothetical protein PBRA_006942 [Plasmodiophora brassicae] diamond 243 169 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;