RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA781427" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 7 ✖

bioproject 1

  • PRJNA781427 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3763365 3763365 PRJNA781427_P_NODE_37203_length_376_cov_1.016502_g36321_i0 PRJNA781427 37203 376 1.016502 3.82204752 root 1 Root_unresolved Root_unresolved 684 0   NTclustered gi|1045515|gb|U36800.1|MLU36800 11786 g36321 i0 99.468 11.0026595744681 376 2 100 0 1 376 1610 1985 Murine leukemia virus Mo Ampho Delta recombinant envelope polyprotein (env) mRNA, complete cds blastn 4137 684 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
12239559 12239559 PRJNA781427_P_NODE_13930_length_685_cov_1.532680_g13114_i0 PRJNA781427 13930 685 1.53268 10.498858 Gammaretrovirus murleu 3428959 Viruses Viruses 1105 0   NTclustered gi|1167936820|gb|KY574514.1| 11786 g13114 i0 95.766 100 685 29 100 0 1 685 2517 1833 Murine leukemia virus isolate CB208, complete genome blastn 68500 1105 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
12240969 12240969 PRJNA781427_P_NODE_6790_length_1066_cov_10.305136_g6220_i0 PRJNA781427 6790 1066 10.305136 109.85274976 Betaretrovirus squmon 3427297 Viruses Viruses 1655 0   NTclustered gi|1666023499|gb|MK561030.1| 11856 g6220 i0 97.812 6.13039399624765 960 20 99 1 108 1066 8529 7570 Squirrel monkey retrovirus, complete genome blastn 6535 1655 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
12241053 12241053 PRJNA781427_P_NODE_71150_length_258_cov_1.367568_g70266_i0 PRJNA781427 71150 258 1.367568 3.52832544 Gammaretrovirus murleu 3428959 Viruses Viruses 466 7.08e-127   NTclustered gi|1167936811|gb|KY574513.1| 11786 g70266 i0 99.225 95.2906976744186 258 2 100 0 1 258 414 671 Murine leukemia virus isolate C58v2-MCF, complete genome blastn 24585 466 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
17339616 17339616 PRJNA781427_P_NODE_70754_length_259_cov_1.344086_g69870_i0 PRJNA781427 70754 259 1.344086 3.48118274 Endogenous cotton pararetrovirus 3062848 Viruses Viruses 479 9.13e-131   NTclustered gi|2550532687|gb|OR269942.1| 3062848 g69870 i0 100 22.3899613899614 259 0 100 0 1 259 4005 3747 MAG: Endogenous cotton pararetrovirus isolate APR19 genomic sequence blastn 5799 479 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus
21162506 21162506 PRJNA781427_P_NODE_1417_length_2172_cov_2.138161_g1272_i0 PRJNA781427 1417 2172 2.138161 46.44085692 RD114 retrovirus 11834 Viruses Viruses 4006 0   NTclustered gi|306482054|dbj|AB559882.1| 11834 g1272 i0 99.954 59.5593922651934 2172 1 100 0 1 2172 5906 8077 RD114 retrovirus proviral DNA, complete genome, strain: CRT1 blastn 129363 4006 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus RD114 retrovirus
23714041 23714041 PRJNA781427_P_NODE_64059_length_277_cov_1.073529_g63175_i0 PRJNA781427 64059 277 1.073529 2.97367533 Endogenous cotton pararetrovirus 3062848 Viruses Viruses 405 1.6999999999999996e-108   NTclustered gi|2550532685|gb|OR269940.1| 3062848 g63175 i0 100 4.53429602888087 219 0 100 0 1 219 272 490 MAG: Endogenous cotton pararetrovirus isolate CLR01 genomic sequence blastn 1256 405 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Endogenous cotton pararetrovirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;