RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA781427", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA781427 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26895586 26895586 PRJNA781427_P_NODE_76501_length_250_cov_0.870056_g75617_i0 PRJNA781427 76501 250 0.870056 2.17514 Armatimonadota bacterium 2033014 Bacteria Bacteria 140 3.87e-39   NR MFA6666666.1 2033014 g75617 i0 78 1.956 82 18 98.4 0 3 248 13 94 MFA6666666.1 site-specific DNA-methyltransferase [Armatimonadota bacterium] diamond 489 140 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30243278 30243278 PRJNA781427_P_NODE_83012_length_247_cov_0.885057_g82128_i0 PRJNA781427 83012 247 0.885057 2.18609079 Armatimonadetes bacterium RBG_16_67_12 1797288 Bacteria Bacteria 107 5.5e-26   NR OFX28075.1 1797288 g82128 i0 73.2 3.83805668016194 82 22 99.6 0 247 2 207 288 OFX28075.1 MAG: hypothetical protein A2Z07_05350 [Armatimonadetes bacterium RBG_16_67_12] diamond 948 107 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium RBG_16_67_12
31539083 31539083 PRJNA781427_P_NODE_77716_length_250_cov_0.870056_g76832_i0 PRJNA781427 77716 250 0.870056 2.17514 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 58.9 7.92e-8   NR HZO90068.1 2739509 g76832 i0 45.5 1.608 66 36 79.2 0 49 246 3 68 HZO90068.1 hypothetical protein [Chthonomonadaceae bacterium] diamond 402 58.9 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;