RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA781427" and tax_clade = "SAR92 clade"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR92 clade · 1 ✖

bioproject 1

  • PRJNA781427 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2037911 2037911 PRJNA781427_P_NODE_90842_length_244_cov_0.900585_g89958_i0 PRJNA781427 90842 244 0.900585 2.1974274 SAR92 clade bacterium H455 2974818 Bacteria Bacteria 401 1.8999999999999998e-107   NTclustered gi|2293304500|gb|CP103416.1| 2974818 g89958 i0 96.311 1.86065573770492 244 9 100 0 1 244 839540 839783 SAR92 clade bacterium H455 chromosome blastn 454 401 1 Bacteria SAR92 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Porticoccaceae   SAR92 clade bacterium H455

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;