RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA781427", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA781427 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9688800 9688800 PRJNA781427_P_NODE_3008_length_1615_cov_1.822309_g2717_i0 PRJNA781427 3008 1615 1.822309 29.43029035 Longimicrobiales bacterium 2910168 Bacteria Bacteria 54.7 0.046   NTclustered gi|2621703510|emb|OY762557.1| 2910168 g2717 i0 100 0.0179566563467492 29 0 2 0 1410 1438 2565353 2565381 MAG: Longimicrobiales bacterium isolate c10e2151-7d97-4465-9cf7-a78a4796a63d genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
19887851 19887851 PRJNA781427_P_NODE_54856_length_302_cov_1.397380_g53973_i0 PRJNA781427 54856 302 1.39738 4.2200876 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 501 2.32e-137   NTclustered gi|2874253728|emb|OY969570.1| 412054 g53973 i0 96.7 260.5 303 7 100 2 1 302 2237631 2237331 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 78671 501 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
19887934 19887934 PRJNA781427_P_NODE_57936_length_293_cov_0.959091_g57052_i0 PRJNA781427 57936 293 0.959091 2.81013663 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 446 1.07e-120   NTclustered gi|2874253728|emb|OY969570.1| 412054 g57052 i0 94.218 76.3378839590444 294 14 100 2 1 293 172749 172458 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 22367 446 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
21164565 21164565 PRJNA781427_P_NODE_94137_length_242_cov_0.911243_g93253_i0 PRJNA781427 94137 242 0.911243 2.20520806 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 147 9.72e-31   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g93253 i0 96.591 21.5206611570248 88 3 36 0 155 242 1549492 1549579 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 5208 147 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
28758857 28758857 PRJNA781427_P_NODE_67667_length_267_cov_1.500000_g66783_i0 PRJNA781427 67667 267 1.5 4.005 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 129 7.690000000000001e-36   NR MEJ2152439.1 2026742 g66783 i0 70.2 0.943820224719101 84 25 94.4 0 2 253 65 148 MEJ2152439.1 hypothetical protein [Gemmatimonadota bacterium] diamond 252 129 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30053440 30053440 PRJNA781427_P_NODE_93891_length_242_cov_0.911243_g93007_i0 PRJNA781427 93891 242 0.911243 2.20520806 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.7 0.0343   NR HKP15771.1 2026741 g93007 i0 41.3 0.78099173553719 63 31 73.1 2 63 239 200 260 HKP15771.1 tRNA pseudouridine(55) synthase TruB [Gemmatimonadaceae bacterium] diamond 189 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;