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contig_metadata

14 rows where bioproject = "PRJNA781427" and tax_clade = "BD1-7 clade"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • BD1-7 clade · 14 ✖

bioproject 1

  • PRJNA781427 · 14 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3312541 3312541 PRJNA781427_P_NODE_66403_length_270_cov_2.263959_g65519_i0 PRJNA781427 66403 270 2.263959 6.1126893 marine gamma proteobacterium HTCC2143 247633 Bacteria Bacteria 167 4.66e-50   NR EAW31444.1 247633 g65519 i0 91.1 2 90 8 100 0 270 1 126 215 EAW31444.1 phosphate uptake regulatory protein PhoU [marine gamma proteobacterium HTCC2143] diamond 540 167 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
7139677 7139677 PRJNA781427_P_NODE_59566_length_288_cov_1.432558_g58682_i0 PRJNA781427 59566 288 1.432558 4.12576704 marine gamma proteobacterium HTCC2143 247633 Bacteria Bacteria 169 3.48e-48   NR EAW30555.1 247633 g58682 i0 83.2 1.97916666666667 95 16 99 0 287 3 309 403 EAW30555.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [marine gamma proteobacterium HTCC2143] diamond 570 169 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
10140522 10140522 PRJNA781427_P_NODE_70468_length_260_cov_1.235294_g69584_i0 PRJNA781427 70468 260 1.235294 3.2117644 Gammaproteobacteria 1236 Bacteria Bacteria 123 3.83e-34   NR EAW32021.1 247633 g69584 i0 68.2 4.89230769230769 85 27 98.1 0 4 258 44 128 EAW32021.1 Integral membrane protein possibly involved in chromosome condensation [marine gamma proteobacterium HTCC2143] diamond 1272 123 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
18612926 18612926 PRJNA781427_P_NODE_67255_length_268_cov_1.579487_g66371_i0 PRJNA781427 67255 268 1.579487 4.23302516 Oceanicoccus 1084558 Bacteria Bacteria 147 8.46e-39   NR EAW32730.1 247633 g66371 i0 80.9 26.7313432835821 89 17 99.6 0 268 2 399 487 EAW32730.1 DNA polymerase I [marine gamma proteobacterium HTCC2143] diamond 7164 147 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
23712940 23712940 PRJNA781427_P_NODE_21059_length_526_cov_1.019868_g20189_i0 PRJNA781427 21059 526 1.019868 5.36450568 marine gamma proteobacterium HTCC2143 247633 Bacteria Bacteria 297 1.88e-97   NR EAW32528.1 247633 g20189 i0 88 2.99429657794677 175 21 99.8 0 2 526 195 369 EAW32528.1 Phosphoserine phosphatase SerB:HAD-superfamily hydrolase, subfamily IB (PSPase-like) protein [marine gamma proteobacterium HTCC2143] diamond 1575 297 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
24987047 24987047 PRJNA781427_P_NODE_37840_length_372_cov_1.545151_g36958_i0 PRJNA781427 37840 372 1.545151 5.74796172 Bacteria 2 Bacteria Bacteria 239 2.65e-71   NR EAW31506.1 247633 g36958 i0 90.2 1.98387096774194 123 12 99.2 0 371 3 110 232 EAW31506.1 valyl-tRNA synthetase [marine gamma proteobacterium HTCC2143] diamond 738 240 0.995833333333333 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
26958450 26958450 PRJNA781427_P_NODE_79542_length_249_cov_0.875000_g78658_i0 PRJNA781427 79542 249 0.875 2.17875 marine gamma proteobacterium HTCC2143 247633 Bacteria Bacteria 134 2.47e-34   NR EAW29583.1 247633 g78658 i0 77.8 0.975903614457831 81 18 97.6 0 3 245 236 316 EAW29583.1 translocase [marine gamma proteobacterium HTCC2143] diamond 243 134 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
27116555 27116555 PRJNA781427_P_NODE_45122_length_338_cov_0.871698_g44239_i0 PRJNA781427 45122 338 0.871698 2.94633924 marine gamma proteobacterium HTCC2143 247633 Bacteria Bacteria 122 3.07e-30   NR EAW29791.1 247633 g44239 i0 86.4 0.585798816568047 66 9 58.6 0 141 338 1 66 EAW29791.1 glyceraldehyde-3-phosphate dehydrogenase, type I [marine gamma proteobacterium HTCC2143] diamond 198 122 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
27663303 27663303 PRJNA781427_P_NODE_89644_length_244_cov_0.900585_g88760_i0 PRJNA781427 89644 244 0.900585 2.1974274 Oceanicoccus 1084558 Bacteria Bacteria 82.4 1.15e-17   NR EAW32832.1 247633 g88760 i0 67.8 1.43852459016393 59 19 72.5 0 241 65 100 158 EAW32832.1 pantetheine-phosphate adenylyltransferase [marine gamma proteobacterium HTCC2143] diamond 351 83.2 0.990384615384615 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
28190361 28190361 PRJNA781427_P_NODE_58746_length_290_cov_1.419355_g57862_i0 PRJNA781427 58746 290 1.419355 4.1161295 marine gamma proteobacterium HTCC2143 247633 Bacteria Bacteria 70.5 4e-13   NR EAW31126.1 247633 g57862 i0 66.7 0.558620689655172 54 18 55.9 0 164 3 1 54 EAW31126.1 hypothetical protein GP2143_03358 [marine gamma proteobacterium HTCC2143] diamond 162 70.5 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
28474825 28474825 PRJNA781427_P_NODE_68706_length_264_cov_2.293194_g67822_i0 PRJNA781427 68706 264 2.293194 6.05403216 marine gamma proteobacterium HTCC2143 247633 Bacteria Bacteria 111 2.75e-26   NR EAW32018.1 247633 g67822 i0 59.8 1.97727272727273 87 35 98.9 0 263 3 52 138 EAW32018.1 Periplasmic protease [marine gamma proteobacterium HTCC2143] diamond 522 111 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
29084096 29084096 PRJNA781427_P_NODE_30388_length_422_cov_0.882521_g29507_i0 PRJNA781427 30388 422 0.882521 3.72423862 Oceanicoccus 1084558 Bacteria Bacteria 238 1.91e-70   NR EAW31267.1 247633 g29507 i0 86.4 2.98578199052133 140 19 99.5 0 1 420 289 428 EAW31267.1 Biotin/lipoyl attachment [marine gamma proteobacterium HTCC2143] diamond 1260 238 1 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
31390293 31390293 PRJNA781427_P_NODE_63116_length_279_cov_1.315534_g62232_i0 PRJNA781427 63116 279 1.315534 3.67033986 Oceanicoccus 1084558 Bacteria Bacteria 82.8 2.2e-16   NR EAW31256.1 247633 g62232 i0 87.8 1.35483870967742 41 5 44.1 0 277 155 292 332 EAW31256.1 D-cysteine desulfhydrase [marine gamma proteobacterium HTCC2143] diamond 378 83.2 0.995192307692308 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
32686487 32686487 PRJNA781427_P_NODE_75460_length_251_cov_0.865169_g74576_i0 PRJNA781427 75460 251 0.865169 2.17157419 Oceanicoccus 1084558 Bacteria Bacteria 148 8.05e-41   NR EAW32761.1 247633 g74576 i0 91.6 2.97609561752988 83 7 99.2 0 1 249 118 200 EAW32761.1 probable phosphate transporter [marine gamma proteobacterium HTCC2143] diamond 747 149 0.993288590604027 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;