RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA781196" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA781196 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9687689 9687689 PRJNA781196_P_NODE_32908_length_308_cov_1.131915_g32531_i0 PRJNA781196 32908 308 1.131915 3.4862982 Amoeba proteus 5775 Tubulinea other_Eukaryota 289 2.0099999999999996e-73   NTclustered gi|844573744|gb|KP411223.1| 5775 g32531 i0 83.654 1.01298701298701 312 46 100 3 1 308 343 33 Amoeba proteus Tom40 mRNA, complete cds blastn 312 289 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
12239410 12239410 PRJNA781196_P_NODE_66810_length_242_cov_0.923077_g66433_i0 PRJNA781196 66810 242 0.923077 2.23384634 Amoeba proteus 5775 Tubulinea other_Eukaryota 257 4.3e-64   NTclustered gi|844573744|gb|KP411223.1| 5775 g66433 i0 85.892 0.995867768595041 241 34 99 0 2 242 790 550 Amoeba proteus Tom40 mRNA, complete cds blastn 241 257 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
19886546 19886546 PRJNA781196_P_NODE_63876_length_244_cov_0.912281_g63499_i0 PRJNA781196 63876 244 0.912281 2.22596564 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 418 1.8799999999999994e-112   NTclustered gi|300078496|gb|GU001158.1| 5778 g63499 i0 97.551 25.094262295082 245 4 100 2 1 244 4131 4374 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6123 418 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21161599 21161599 PRJNA781196_P_NODE_16997_length_404_cov_0.930514_g16620_i0 PRJNA781196 16997 404 0.930514 3.75927656 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 708 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g16620 i0 98.267 62.3737623762376 404 7 100 0 1 404 2267 2670 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 25199 708 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22436694 22436694 PRJNA781196_P_NODE_44198_length_269_cov_1.591837_g43821_i0 PRJNA781196 44198 269 1.591837 4.28204153 Amoeba proteus 5775 Tubulinea other_Eukaryota 278 3.73e-70   NTclustered gi|844573744|gb|KP411223.1| 5775 g43821 i0 85.393 0.992565055762082 267 39 99 0 1 267 601 335 Amoeba proteus Tom40 mRNA, complete cds blastn 267 278 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
24163034 24163034 PRJNA781196_P_NODE_59659_length_247_cov_0.896552_g59282_i0 PRJNA781196 59659 247 0.896552 2.21448344 Hartmannellidae 5776 Tubulinea other_Eukaryota 412 8.89e-111   NTclustered gi|399764208|gb|JQ271719.1| 1215625 g59282 i0 96.761 40.7651821862348 247 8 100 0 1 247 203 449 Saccamoeba sp. PV67 18S ribosomal RNA gene, partial sequence blastn 10069 412 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. PV67

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;